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Дата изменения: Unknown
Дата индексирования: Sun Feb 3 10:26:17 2013
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allpy: 835efa2a8c71 .hgignore

allpy

view .hgignore @ 817:835efa2a8c71

optimization of rasmol_homology: keep structure loaded of two sequences only One of steps of this program is superimposition of all sequences with main sequence and saving of all structures to pdb file. Loaded structure of all sequences is not needed to do this. At every moment only structure of main sequence and of superimposing sequence. This optimization results in essential memory saving. Output files should be the same to previous revision. To implement this optimization methods supeimpose and save_pdb of alignment were replaced with methods with same names of sequence. So some code is same as code of methods of alignment. Note: behaves as before, with superimpose and save_pdb methods of alignment. Model was returned by these methods but never used while generating spt script. This can result in collisions of rasmol selections when number of sequences is greater than max number of chains of one model.
author boris (kodomo) <bnagaev@gmail.com>
date Fri, 15 Jul 2011 02:23:27 +0400
parents cf1657b94c96
children 813679b6c514
line source
1 syntax: glob
3 # Compiler-generated junk
4 *.pyc
5 build
6 output
7 *.o
8 blocks3d/wt/blocks3d-wt
9 debian/.dep
10 .coverage
12 # Junk from text-editors
13 *.geany
14 *.swp
16 # Hand-generated temporary files
17 temp
18 temp.*
20 # Temporary files from building
21 allpy/data/components.cif
22 blocks3d/www/input/conservative_groups.js
24 # Temporary files from sphinx
25 docs/build
27 # Temporary files from debianization
28 debian/python-allpy/
29 debian/blocks3d/
30 debian/blocks3d-wt/
31 debian/geometrical-core2/
33 debian/bin/
34 debian/*.substvars
35 debian/*.debhelper*
36 debian/*stamp*
37 debian/files
38 debian/control
39 debian/*.log
40 debian/*/*.log
41 debian/tmp/
42 debian/pycompat
43 *.deb
44 *.cdbs-config_list