Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.fbb.msu.ru/hg/allpy/file/835efa2a8c71/debian/rules
Дата изменения: Unknown
Дата индексирования: Sun Feb 3 19:04:03 2013
Кодировка:
allpy: 835efa2a8c71 debian/rules

allpy

view debian/rules @ 817:835efa2a8c71

optimization of rasmol_homology: keep structure loaded of two sequences only One of steps of this program is superimposition of all sequences with main sequence and saving of all structures to pdb file. Loaded structure of all sequences is not needed to do this. At every moment only structure of main sequence and of superimposing sequence. This optimization results in essential memory saving. Output files should be the same to previous revision. To implement this optimization methods supeimpose and save_pdb of alignment were replaced with methods with same names of sequence. So some code is same as code of methods of alignment. Note: behaves as before, with superimpose and save_pdb methods of alignment. Model was returned by these methods but never used while generating spt script. This can result in collisions of rasmol selections when number of sequences is greater than max number of chains of one model.
author boris (kodomo) <bnagaev@gmail.com>
date Fri, 15 Jul 2011 02:23:27 +0400
parents cc1ed3a62673
children 2b74596f3c64
line source
1 #!/usr/bin/make -f
3 DEB_AUTO_UPDATE_DEBIAN_CONTROL = yes
4 DEB_PYTHON_SYSTEM = pysupport
5 DEB_COMPRESS_EXCLUDE = .py
6 DEB_PYTHON_MODULE_PACKAGES = $(filter-out blocks3d-wt, $(DEB_PACKAGES))
8 include /usr/share/cdbs/1/rules/debhelper.mk
9 include /usr/share/cdbs/1/class/python-distutils.mk
11 build/python-allpy::
12 make -C docs html
14 build/geometrical-core2::
15 -mkdir debian/bin
16 fix_path='import sys\nsys.path.append("/usr/share/geometrical-core2")'; \
17 cat geometrical_core/geometrical-core \
18 | sed "1 { x; s@^@\n$${fix_path}\n@; x }; /^$$/ x" \
19 > debian/bin/geometrical-core2
20 chmod +x debian/bin/geometrical-core2
22 clean::
23 rm -rf debian/bin
25 # Manually build blocks3d-wt to avoid build-dependency on qmake
26 b3dwt = blocks3d/wt
27 b3dwt_cpp = $(wildcard $(b3dwt)/*.C)
28 b3dwt_o = $(b3dwt_cpp:.C=.o)
29 b3dwt_exe = $(b3dwt)/blocks3d-wt
31 -include debian/.dep
33 build/blocks3d-wt:: $(b3dwt_exe) debian/.dep
35 $(b3dwt_exe): $(b3dwt_o)
36 $(CC) -o $@ $^ -lwt -lwtfcgi -lboost_signals -O3
38 $(b3wdt)/%.o:
39 $(CC) -o $@ $< -O3
41 clean::
42 rm -f $(b3dwt_o)
44 debian/.dep: $(b3dwt_cpp)
45 $(CC) $^ -MM > $@