allpy: 69079d72d207 Makefile

allpy

view Makefile @ 640:69079d72d207

allpy.fileio: use stdin/stdout when communicating with EMBOSS [closes #38] The new implementation allows using any special files for fileio, including stdin/stdout, urllib, StringIO, etc. The new implementation is also cleaner and not prone to leaving temporary files behind in any cases.

author	Daniil Alexeyevsky <dendik@kodomo.fbb.msu.ru>
date	Fri, 03 Jun 2011 15:29:47 +0400
parents	2841177ebc2b
children	45c38f47e571

line source

1 components_cif_gz_url = \

2 ftp://ftp.ebi.ac.uk/pub/databases/rcsb/pdb/data/monomers/components.cif.gz

3 codes_py = allpy/data/codes.py

4 components_cif = allpy/data/components.cif

6 all: doc codes tests

8 tests:

9 nosetests --with-coverage

11 doc:

12 sphinx-autopackage --suffix=rst --dest-dir=docs/source/allpy/ allpy

13 $(MAKE) -C docs html

15 force-doc:

16 rm docs/source/allpy/*

17 rm -rf docs/build

18 $(MAKE) doc

20 codes: $(codes_py)

22 force-codes:

23 rm $(codes_py)

24 $(MAKE) codes

26 $(codes_py): $(components_cif)

27 python allpy/data/mkcodes.py -i $< -o $@

29 $(components_cif):

30 wget -O - $(components_cif_gz_url) | zcat > $@