view allpy/config.py @ 372:670ae384aa37
Fixed bugs & refactored base.Alignment.process & it's helpers
- there were a few name errors
- process would previously behave bad if new alignment was shorter
- refactored and simplified code for copying sequence contents
| author |
Daniil Alexeyevsky <me.dendik@gmail.com> |
| date |
Mon, 31 Jan 2011 18:44:23 +0300 |
| parents |
57c923c2e333 |
| children |
d7fc6865ce58 |
line source
1 delta = 2.0 # for geometrical core building
2 minsize = 20 # min size of returning cores
3 maxabsent = 0.15 # deprecated?
5 # pdb download url (XXXX is pdb code place)
6 pdb_url = 'http://www.pdb.org/pdb/files/%s.pdb'
7 pdb_dir = '/tmp/%s.pdb'
8 timeout = 10 # time in sec. for BRON-KERBOSH algorithm
11 # min part or new atoms in new alternative core
14 # max number of cores (including main core)
