allpy: 597c0d0e9124 allpy/rna.py

allpy

Chaned sequence name format in extract_pfam.py to ">PDBID_PDBCHAIN ORIGINAL_NAME ORIGINAL_DESCRIPTION LIST_OF_ASSOCIATED_PDB_FRAGMENTS"

author	Daniil Alexeyevsky <dendik@kodomo.fbb.msu.ru>
date	Sat, 26 Feb 2011 18:59:48 +0300
parents	5639138f619a
children	6e87dcc73d8b

line source

1 import base

2 import data.codes

4 import rna

6 class Monomer(base.Monomer):

7 """RNA monomers: nucleotides."""

8 type = 'rna'

9 types = rna

10 by_code1 = {}

11 by_code3 = {}

12 by_name = {}

13 Monomer._initialize(data.codes.rna)

15 class Sequence(base.Sequence):

16 types = rna

18 class Block(Alignment, base.Block):

19 pass

21 class Alignment(base.Alignment):

22 types = rna

24 # vim: set ts=4 sts=4 sw=4 et: