allpy: 56d62d405021 allpy/dna.py

allpy

view allpy/dna.py @ 599:56d62d405021

pair_cores_all.py: close openned files to avoid error error "Too many openned files" occured in child processes multiprocessing seems to use old process when new python process is created to avoid increasing of process number. Therefore files openned in childred are not closed automatically

author	boris (kodomo) <bnagaev@gmail.com>
date	Sun, 03 Apr 2011 17:05:32 +0400
parents	5639138f619a
children	5f9e9c4e9ed6 e461a5529338

line source

1 import base

2 import data.codes

4 import dna

6 class Monomer(base.Monomer):

7 """DNA monomers: nucleotides."""

8 type = 'dna'

9 types = dna

10 by_code1 = {}

11 by_code3 = {}

12 by_name = {}

13 Monomer._initialize(data.codes.dna)

15 class Sequence(base.Sequence):

16 types = dna

18 class Alignment(base.Alignment):

19 types = dna

21 class Block(Alignment, base.Block):

22 pass

24 # vim: set ts=4 sts=4 sw=4 et: