allpy: 4a9b4503a027 allpy/protein.py

allpy

Added class Column to different dna/rna/protein modules too

author	Daniil Alexeyevsky <dendik@kodomo.fbb.msu.ru>
date	Mon, 21 Nov 2011 18:40:16 +0300
parents	faa7e19bffd9
children

line source

1 import base

2 import data.codes

4 import protein

6 class Monomer(base.Monomer):

7 """Protein monomers: aminoacids."""

8 type = 'protein'

9 types = protein

10 by_code1 = {}

11 by_code3 = {}

12 by_name = {}

13 Monomer._initialize(data.codes.protein)

15 class Protein(list):

16 """User defined protein; list of protein_sequences."""

17 pass

19 class Sequence(base.Sequence):

20 types = protein

22 class Column(base.Column):

23 types = protein

25 class Alignment(base.Alignment):

26 types = protein

28 class Block(Alignment, base.Block):

29 pass

31 # vim: set ts=4 sts=4 sw=4 et: