Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.fbb.msu.ru/hg/allpy/file/19ffcf1ac4a0/NEWS
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Дата индексирования: Tue Oct 2 16:51:52 2012
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allpy: 19ffcf1ac4a0 NEWS

allpy

view NEWS @ 935:19ffcf1ac4a0

Fixed bug in processors: used Block class for reading alignment file. Until recent changes (introduction of Alignment/Block._append_columns) it worked out fine. But practically, we used alignment API: we created an empty object and called append_file on it. For blocks this resulted in a block that did not know it's alignment. Recent changes in implementation caused blocks to actually have their own specific methods besides constructor, and these methods use knowlege of alignment a block belongs to. Hence, the previous behaviour was a bug.
author Daniil Alexeyevsky <dendik@kodomo.fbb.msu.ru>
date Mon, 28 Nov 2011 18:33:25 +0300
parents da46b25fd67d
children b8f1c216bca8
line source
1 1.4.1
3 This is a code cleanup release.
4 Nothing should change in the interface or behaviour at all.
6 1.4.0 (2011-07-20)
8 * new: Alignments, Sequences and Blocks now can have Markups, see the wiki
9 * new: File format 'markup' for storing alignment with arbitrary markups
10 * new: processor allpy.processors.Needle()
11 * new: method allpy.base.Alignment.rows_as_strings()
12 * new: method allpy.base.Alignment.row_as_list(sequence)
13 * new: method allpy.base.Alignment.row_as_string(sequence)
14 * new: columns_as_lists() returns list of lists, each has 'column' attribute
15 * new: javascript viewer colors columns by conservedness
17 1.3.0 (2011-04-15)
19 * new: started NEWS file
20 * new: started tracking version numbers