allpy: 3a712982ceb8 allpy/protein.py

allpy

view allpy/protein.py @ 843:3a712982ceb8

blocks3d/wt: use vector instead of list as container for tasks Actions are needed from this container: * remove_if * size * push_back list should have constant size(), but it has linear size in some implementations (for example, in g++).

author	boris <bnagaev@gmail.com>
date	Wed, 20 Jul 2011 02:42:04 +0200
parents	387f692e2356
children	4a9b4503a027

line source

1 import base

2 import data.codes

4 import protein

6 class Monomer(base.Monomer):

7 """Protein monomers: aminoacids."""

8 type = 'protein'

9 types = protein

10 by_code1 = {}

11 by_code3 = {}

12 by_name = {}

13 Monomer._initialize(data.codes.protein)

15 class Protein(list):

16 """User defined protein; list of protein_sequences."""

17 pass

19 class Sequence(base.Sequence):

20 types = protein

22 class Alignment(base.Alignment):

23 types = protein

25 class Block(Alignment, base.Block):

26 pass

28 # vim: set ts=4 sts=4 sw=4 et: