1.1 --- a/allpy/base.py	Thu Dec 16 03:26:57 2010 +0300
     1.2 +++ b/allpy/base.py	Thu Dec 16 18:30:43 2010 +0300
     1.3 @@ -339,12 +339,6 @@
     1.4                      yield (column[indexes[original]],
     1.5                      dict([(s, column[indexes[s]]) for s in sequences]))
     1.6  
     1.7 -    def secstr(self, sequence, pdb_chain, gap='-'):
     1.8 -        """ Returns string representing secondary structure """
     1.9 -        return ''.join([
    1.10 -        (sequence.pdb_secstr[pdb_chain][m] if sequence.secstr_has(pdb_chain, m) else gap)
    1.11 -        for m in self.body[sequence]])
    1.12 -
    1.13  class Block(object):
    1.14      """ Block of alignment
    1.15