allpy
annotate .hgignore @ 888:53800c7e3458
add test for secondary structure markup for sequence
Module protein_pdb was copied from blocks3d/protein_pdb.py.
Sequence is created from string, pdb is loaded, ss-markup is applied.
Then secondary structure is checked to be entirely alpha-helix.
see #120
| author | Boris Nagaev <bnagaev@gmail.com> |
|---|---|
| date | Sun, 18 Sep 2011 15:11:49 +0400 |
| parents | 0dbbf6403b7f |
| children | e7760fc574b5 |
| rev | line source |
|---|---|
| dendik@10 | 1 syntax: glob |
| me@198 | 2 |
| me@198 | 3 # Compiler-generated junk |
| dendik@10 | 4 *.pyc |
| bnagaev@61 | 5 build |
| bnagaev@489 | 6 output |
| dendik@486 | 7 *.o |
| dendik@486 | 8 blocks3d/wt/blocks3d-wt |
| dendik@486 | 9 debian/.dep |
| dendik@625 | 10 .coverage |
| me@198 | 11 |
| me@198 | 12 # Junk from text-editors |
| bnagaev@61 | 13 *.geany |
| bnagaev@181 | 14 *.swp |
| me@198 | 15 |
| dendik@535 | 16 # Hand-generated temporary files |
| dendik@535 | 17 temp |
| dendik@535 | 18 temp.* |
| dendik@535 | 19 |
| dendik@859 | 20 # Permananent and useful autogenerated stuff |
| dendik@859 | 21 allpy/data/codes.py |
| dendik@859 | 22 |
| dendik@534 | 23 # Temporary files from building |
| dendik@534 | 24 allpy/data/components.cif |
| bnagaev@658 | 25 blocks3d/www/input/conservative_groups.js |
| dendik@859 | 26 blocks3d/www/input/crc32.js |
| bnagaev@880 | 27 blocks3d/www/input/utf8_encode.js |
| dendik@859 | 28 blocks3d/www/input/dechex.js |
| dendik@859 | 29 blocks3d/www/input/json2.js |
| dendik@859 | 30 blocks3d/wt/files/js |
| dendik@859 | 31 blocks3d/wt/files/resources |
| dendik@861 | 32 blocks3d/html.htm |
| dendik@861 | 33 pair_cores/html.htm |
| dendik@859 | 34 *.zip |
| dendik@534 | 35 |
| me@254 | 36 # Temporary files from sphinx |
| me@254 | 37 docs/build |
| me@254 | 38 |
| me@198 | 39 # Temporary files from debianization |
| me@198 | 40 debian/python-allpy/ |
| dendik@486 | 41 debian/blocks3d/ |
| dendik@486 | 42 debian/blocks3d-wt/ |
| dendik@609 | 43 debian/geometrical-core2/ |
| dendik@486 | 44 |
| dendik@607 | 45 debian/bin/ |
| me@198 | 46 debian/*.substvars |
| me@198 | 47 debian/*.debhelper* |
| me@198 | 48 debian/*stamp* |
| me@198 | 49 debian/files |
| me@198 | 50 debian/control |
| me@198 | 51 debian/*.log |
| me@198 | 52 debian/*/*.log |
| me@198 | 53 debian/tmp/ |
| me@198 | 54 debian/pycompat |
| me@198 | 55 *.deb |
| me@198 | 56 *.cdbs-config_list |