allpy
annotate lib/config.py @ 139:57c923c2e333
sequence.pdb_auto_add
fix allpy_pdb.pdb_id_parse and re1
| author | boris <bnagaev@gmail.com> |
|---|---|
| date | Sun, 24 Oct 2010 18:12:21 +0400 |
| parents | a6d287f9c901 |
| children |
| rev | line source |
|---|---|
| bnagaev@116 | 1 delta = 2.0 # for geometrical core building |
| bnagaev@116 | 2 minsize = 20 # min size of returning cores |
| bnagaev@121 | 3 maxabsent = 0.15 # deprecated? |
| bnagaev@121 | 4 |
| bnagaev@116 | 5 # pdb download url (XXXX is pdb code place) |
| bnagaev@120 | 6 pdb_url = 'http://www.pdb.org/pdb/files/%s.pdb' |
| bnagaev@139 | 7 pdb_dir = '/tmp/%s.pdb' |
| bnagaev@139 | 8 timeout = 10 # time in sec. for BRON-KERBOSH algorithm |
| bnagaev@120 | 9 |
| bnagaev@116 | 10 |
| bnagaev@120 | 11 # min part or new atoms in new alternative core |
| bnagaev@129 | 12 ac_new_atoms = 0.5 |
| bnagaev@129 | 13 |
| bnagaev@129 | 14 # max number of cores (including main core) |
| bnagaev@129 | 15 ac_count = 5 |
| bnagaev@129 | 16 |