allpy
annotate allpy/dna.py @ 599:56d62d405021
pair_cores_all.py: close openned files to avoid error
error "Too many openned files" occured in child processes
multiprocessing seems to use old process when new python process
is created to avoid increasing of process number. Therefore
files openned in childred are not closed automatically
| author | boris (kodomo) <bnagaev@gmail.com> |
|---|---|
| date | Sun, 03 Apr 2011 17:05:32 +0400 |
| parents | 5639138f619a |
| children | 5f9e9c4e9ed6 e461a5529338 |
| rev | line source |
|---|---|
| bnagaev@240 | 1 import base |
| me@353 | 2 import data.codes |
| me@280 | 3 |
| dendik@382 | 4 import dna |
| dendik@382 | 5 |
| me@328 | 6 class Monomer(base.Monomer): |
| me@328 | 7 """DNA monomers: nucleotides.""" |
| me@328 | 8 type = 'dna' |
| dendik@382 | 9 types = dna |
| me@280 | 10 by_code1 = {} |
| me@280 | 11 by_code3 = {} |
| me@280 | 12 by_name = {} |
| me@353 | 13 Monomer._initialize(data.codes.dna) |
| bnagaev@240 | 14 |
| bnagaev@240 | 15 class Sequence(base.Sequence): |
| dendik@382 | 16 types = dna |
| dendik@382 | 17 |
| dendik@382 | 18 class Alignment(base.Alignment): |
| dendik@382 | 19 types = dna |
| bnagaev@240 | 20 |
| me@341 | 21 class Block(Alignment, base.Block): |
| me@341 | 22 pass |
| me@341 | 23 |
| me@280 | 24 # vim: set ts=4 sts=4 sw=4 et: |