allpy: allpy/rna.py annotate

allpy

Added class Column to different dna/rna/protein modules too

author	Daniil Alexeyevsky <dendik@kodomo.fbb.msu.ru>
date	Mon, 21 Nov 2011 18:40:16 +0300
parents	6e87dcc73d8b
children

rev	line source
bnagaev@240	1 import base
me@353	2 import data.codes
me@281	3
dendik@382	4 import rna
dendik@382	5
me@328	6 class Monomer(base.Monomer):
me@328	7 """RNA monomers: nucleotides."""
me@328	8 type = 'rna'
dendik@382	9 types = rna
me@281	10 by_code1 = {}
me@281	11 by_code3 = {}
me@281	12 by_name = {}
me@353	13 Monomer._initialize(data.codes.rna)
bnagaev@240	14
bnagaev@240	15 class Sequence(base.Sequence):
dendik@382	16 types = rna
bnagaev@240	17
dendik@931	18 class Column(base.Column):
dendik@931	19 types = rna
dendik@931	20
dendik@623	21 class Alignment(base.Alignment):
dendik@623	22 types = rna
dendik@623	23
me@341	24 class Block(Alignment, base.Block):
me@341	25 pass
me@341	26
me@281	27 # vim: set ts=4 sts=4 sw=4 et: