allpy
annotate allpy/base.py @ 245:353379082202
allpy: monomers improvements
instance() method of MonomerType required DNA,
RNA etc classes declared in _monomers.py
| author | boris <bnagaev@gmail.com> |
|---|---|
| date | Fri, 03 Dec 2010 23:37:16 +0300 |
| parents | 5caae97bacdf |
| children | 117b03ee9e8f |
| rev | line source |
|---|---|
| bnagaev@244 | 1 import _monomer |
| bnagaev@239 | 2 |
| bnagaev@239 | 3 class Sequence(list): |
| bnagaev@243 | 4 """ Sequence of Monomers |
| bnagaev@243 | 5 |
| bnagaev@243 | 6 list of monomer objects |
| bnagaev@243 | 7 |
| bnagaev@243 | 8 Mandatory data: |
| bnagaev@243 | 9 * name -- str with the name of sequence |
| bnagaev@243 | 10 * description -- str with description of the sequence |
| bnagaev@243 | 11 """ |
| bnagaev@243 | 12 pass |
| bnagaev@243 | 13 |
| bnagaev@244 | 14 MonomerType = _monomer.MonomerType |
| bnagaev@244 | 15 Monomer = _monomer.Monomer |
| bnagaev@239 | 16 |
| bnagaev@239 | 17 class Alignment(list): |
| bnagaev@239 | 18 """ """ |
| bnagaev@239 | 19 pass |
| bnagaev@239 | 20 |
| bnagaev@239 | 21 class Block(list): |
| bnagaev@239 | 22 """ """ |
| bnagaev@239 | 23 pass |
| bnagaev@239 | 24 |