allpy
annotate README.devel @ 815:2c0391cca127
structure: fix model saving (workaround)
Biopython seems to set MODEL record always to 1.
(Maybe it is not biopython but our error.)
Instead of changing model field of biopython model,
generate MODEL and ENDMDL records manually.
Biopython's MODEL record is skipped using StringIO.
| author | boris (kodomo) <bnagaev@gmail.com> |
|---|---|
| date | Fri, 15 Jul 2011 03:03:39 +0400 |
| parents | b87eb91bd929 |
| children |
| rev | line source |
|---|---|
| dendik@604 | 1 Using library in-place |
| dendik@604 | 2 ====================== |
| dendik@604 | 3 |
| me@338 | 4 To use the library in-place, without installing, you have to add it's |
| me@338 | 5 directory to PYTHONPATH. |
| me@338 | 6 |
| dendik@604 | 7 e.g, type this in your shell:: |
| me@338 | 8 |
| dendik@604 | 9 export PYTHONPATH=`pwd` |
| me@344 | 10 |
| dendik@604 | 11 alternatively, you can type:: |
| me@344 | 12 |
| me@344 | 13 . ./SETPATH |
| me@344 | 14 |
| me@344 | 15 which adds the right path to PYTHONPATH and also adds 'utils' directory |
| dendik@604 | 16 to PATH. |
| dendik@604 | 17 |
| dendik@604 | 18 NEWS file |
| dendik@604 | 19 ========= |
| dendik@604 | 20 |
| dendik@604 | 21 NEWS file contains news that are important to the library users, not to the |
| dendik@604 | 22 devels. It must contain a word abot every change in any interfaces. It may |
| dendik@604 | 23 contain a word about bugfix, if that bugfix was important and could cause users |
| dendik@604 | 24 some grief. It must not contain anything else. |
| dendik@604 | 25 |
| dendik@605 | 26 The file grows upwards (like blog, so that all the most important things are at |
| dendik@605 | 27 the top, like) |
| dendik@605 | 28 |
| dendik@604 | 29 Example file format:: |
| dendik@604 | 30 |
| dendik@605 | 31 1.3.1 (2011-05-01) |
| dendik@605 | 32 * bugfix: the Moon was going to fall |
| dendik@605 | 33 |
| dendik@604 | 34 1.3.0 (2011-04-15) |
| dendik@604 | 35 |
| dendik@604 | 36 * new: new feature description |
| dendik@604 | 37 * new: new feature description |
| dendik@604 | 38 * change(!): critical library interface change |
| dendik@604 | 39 * change: change in the library interface |
| dendik@604 | 40 * bugfix: short bug summary, see #ticket |
| dendik@604 | 41 * bugfix: important bug that could destroy the Earth but did not hit trac |
| dendik@604 | 42 |