allpy: allpy/rna.py annotate

allpy

blocks_finder back to 1.4.0 and contains compatibility crutches

author	Boris Burkov <BurkovBA@gmail.com>
date	Tue, 20 Mar 2012 22:08:55 +0400
parents	df571a5233fb
children	4a9b4503a027

rev	line source
bnagaev@240	1 import base
me@353	2 import data.codes
me@281	3
dendik@382	4 import rna
dendik@382	5
me@328	6 class Monomer(base.Monomer):
me@328	7 """RNA monomers: nucleotides."""
me@328	8 type = 'rna'
dendik@382	9 types = rna
me@281	10 by_code1 = {}
me@281	11 by_code3 = {}
me@281	12 by_name = {}
me@353	13 Monomer._initialize(data.codes.rna)
bnagaev@240	14
bnagaev@240	15 class Sequence(base.Sequence):
dendik@382	16 types = rna
bnagaev@240	17
dendik@623	18 class Alignment(base.Alignment):
dendik@623	19 types = rna
dendik@623	20
me@341	21 class Block(Alignment, base.Block):
me@341	22 pass
me@341	23
me@281	24 # vim: set ts=4 sts=4 sw=4 et: