allpy
annotate test/test.py @ 116:0ef1a722b738
lib: graph.py -- class Graph with clique builbing functions
| author | boris <bnagaev@gmail.com> |
|---|---|
| date | Sat, 23 Oct 2010 20:29:40 +0400 |
| parents | ffc102ed0249 |
| children | 5e7851709c95 |
| rev | line source |
|---|---|
| bnagaev@98 | 1 import sys |
| bnagaev@83 | 2 |
| bnagaev@83 | 3 from allpy.lib.project import Project |
| bnagaev@83 | 4 |
| bnagaev@99 | 5 p = Project(open('test.fasta')) |
| bnagaev@83 | 6 print "alignment length: %i" % len(p) |
| bnagaev@110 | 7 print "sequence: %s" % str(p.sequences[0]) |
| bnagaev@83 | 8 |
| bnagaev@110 | 9 p.sequences[0].pdb_chain_add(open('1jcc.pdb'), '1jcc', 'A') |
| bnagaev@110 | 10 #~ p.muscle_align() |
| bnagaev@110 | 11 #~ p.save_fasta(sys.stdout) |