allpy: allpy/dna.py annotate

allpy

Changes in blocks_finder transferred from default to 1.4.2.

author	Boris Burkov <BurkovBA@gmail.com>
date	Mon, 26 Mar 2012 22:08:08 +0400
parents	e461a5529338 4a9b4503a027
children

rev	line source
bnagaev@240	1 import base
me@353	2 import data.codes
me@280	3
dendik@382	4 import dna
dendik@382	5
me@328	6 class Monomer(base.Monomer):
me@328	7 """DNA monomers: nucleotides."""
me@328	8 type = 'dna'
dendik@382	9 types = dna
me@280	10 by_code1 = {}
me@280	11 by_code3 = {}
me@280	12 by_name = {}
me@353	13 Monomer._initialize(data.codes.dna)
bnagaev@240	14
bnagaev@240	15 class Sequence(base.Sequence):
dendik@382	16 types = dna
dendik@382	17
dendik@931	18 class Column(base.Column):
dendik@931	19 types = dna
dendik@931	20
dendik@382	21 class Alignment(base.Alignment):
dendik@382	22 types = dna
bnagaev@240	23
me@341	24 class Block(Alignment, base.Block):
me@341	25 pass
me@341	26
me@280	27 # vim: set ts=4 sts=4 sw=4 et: