allpy
annotate NEWS @ 1050:00d6145cba0f
Changes in blocks_finder transferred from default to 1.4.2.
| author | Boris Burkov <BurkovBA@gmail.com> |
|---|---|
| date | Mon, 26 Mar 2012 22:08:08 +0400 |
| parents | 818263bbcd1a |
| children |
| rev | line source |
|---|---|
| bnagaev@992 | 1 * new: Geometrical core improvement: ignore cores, owned by one SS element |
| bnagaev@992 | 2 |
| bnagaev@991 | 3 * new: add features of blocks3d.py to pair_cores.py |
| bnagaev@991 | 4 * new: add MonomerHomology-based high blocks building algo to pair-cores |
| bnagaev@991 | 5 * new: print default values of command line args in help message (pair_cores) |
| bnagaev@995 | 6 * new: add web interface for pair-cores |
| bnagaev@991 | 7 |
| dendik@848 | 8 1.4.1 |
| dendik@848 | 9 |
| dendik@848 | 10 This is a code cleanup release. |
| dendik@848 | 11 Nothing should change in the interface or behaviour at all. |
| dendik@848 | 12 |
| dendik@848 | 13 1.4.0 (2011-07-20) |
| dendik@624 | 14 |
| dendik@697 | 15 * new: Alignments, Sequences and Blocks now can have Markups, see the wiki |
| dendik@717 | 16 * new: File format 'markup' for storing alignment with arbitrary markups |
| dendik@633 | 17 * new: processor allpy.processors.Needle() |
| dendik@633 | 18 * new: method allpy.base.Alignment.rows_as_strings() |
| dendik@650 | 19 * new: method allpy.base.Alignment.row_as_list(sequence) |
| dendik@650 | 20 * new: method allpy.base.Alignment.row_as_string(sequence) |
| dendik@657 | 21 * new: columns_as_lists() returns list of lists, each has 'column' attribute |
| dendik@662 | 22 * new: javascript viewer colors columns by conservedness |
| dendik@624 | 23 |
| dendik@602 | 24 1.3.0 (2011-04-15) |
| dendik@602 | 25 |
| dendik@602 | 26 * new: started NEWS file |
| dendik@602 | 27 * new: started tracking version numbers |