allpy
annotate allpy/dna.py @ 350:0411fa851bba
Fixed references to base interface according to previous changes (closes #12)
| author | Daniil Alexeyevsky <me.dendik@gmail.com> |
|---|---|
| date | Fri, 21 Jan 2011 15:00:23 +0300 |
| parents | f6ae2c7f3be6 |
| children | 24a058450d72 |
| rev | line source |
|---|---|
| bnagaev@240 | 1 import base |
| me@280 | 2 |
| me@328 | 3 class Monomer(base.Monomer): |
| me@328 | 4 """DNA monomers: nucleotides.""" |
| me@328 | 5 type = 'dna' |
| me@280 | 6 by_code1 = {} |
| me@280 | 7 by_code3 = {} |
| me@280 | 8 by_name = {} |
| me@328 | 9 Monomer._initialize() |
| bnagaev@240 | 10 |
| bnagaev@240 | 11 class Sequence(base.Sequence): |
| me@342 | 12 monomer_type = Monomer |
| bnagaev@240 | 13 |
| me@341 | 14 class Alignment(base.Alignment): |
| me@341 | 15 sequence_type = Sequence |
| me@341 | 16 |
| me@341 | 17 class Block(Alignment, base.Block): |
| me@341 | 18 pass |
| me@341 | 19 |
| me@280 | 20 # vim: set ts=4 sts=4 sw=4 et: |