DotHelix: Motifs' Collection Map Results

References:

• Leontovich A.M.,Brodsky L.I., Gorbalenya A.E. Construction of the full local similarity map for two biopolymers, 1993, Biosystems, 30,57-63.[Word97 doc]
• Brodsky L.I., Ivanov V.V., Kalaidzidis Ya.L., Leontovich A.M., Nikolaev V.K., Feranchuk S.I., Drachev V.A. GeneBee-NET:Internet-based server for analyzing biopolymers structure, 1995, Biochemistry, 60, 8, 923-928. [Word97 doc]

Name	Value
Motif's power threshold - DotHelix	0
Motif's power threshold - noise upper bound	6
Motif's length threshold	7
Maximum number of motifs to plot	1000
Maximum number of motifs to output	50
Threshold of motif's homology percentage_	0.01
Accurate Dothelix	ON
Motif frequences recalc	ON
Normalize weight matrix	ON
Weight matrices	BLOSUM62

Sequences

>PIX1_DROME 

MDRSSAVGGCGGGGGLGVGVVTSSATALGPGGLTNGGGGVVSGALNGLEAMSAESTGLCL QDLVSAGTANGAGSAGSAESATTTSTALSSGSTGSSTVNGGGSSTSGTEHLHSHHSLHDS SSSVSISPAISSLMPISSLSHLHHSAGQDLVGGYSQHPHHTVVPPHTPKHEPLEKLRIWA ETGDFRDSHSSMTAVANSLDSTHLNNFQTSSTSSISNRSRDRKDGNRSVNETTIKTENIS SSGHDEPMTTSGEEPKNDKKNKRQRRQRTHFTSQQLQELEHTFSRNRYPDMSTREEIAMW TNLTEARVRVWFKNRRAKWRKRERNAMNAAVAAADFKSGFGTQFMQPFADDSLYSSYPYN NWTKVPSPLGTKPFPWPVNPLGSMVAGNHHQNSVNCFNTGASGVAVSMNNASMLPGSMGS SLSNTSNVGAVGAPCPYTTPANPYMYRSAAEPCMSSSMSSSIATLRLKAKQHASAGFGSP YSAPSPVSRSNSAGLSACQYTGVGVTDVV 

>PIX1_AG 

GGGGSGGGGSGGPTPSSLGDTMSDSAGLCLQDLVGVNGTGGGGGGGGGAGGTGGGPGGAN NTLADHLHGTGAHHGPHTHHSLHDGLVSGGVSVSSAITSLMSPGGINSGGLGHLHHGAPD LSAHHHHHHHHHQHHHSSALHEPLEKLKLWAETGDFRENSHTGMTSVSSIDHAQMGFPAS SPRNRSSRDRKNDVSRCINEASVKTENLSSGMSHEDGTGSVAPGTTIQQDGTDGTKNDKK NKRQRRQRTHFTSQQLHELEQTFSRNRYPDMSTREEIAMWTNLTEARVRVWFKNRRAKWR KRERNQMNAIAAADFKNGFGPQFVQPFADTDTLYSSYTYNNWAKVPSPLGAKTFPWTVNP LGTSIVSTNHHQNSINCFNTSASSVAAGMAGTGTMLPASMGTGLTGTSGATGVSPTPCPY TTPTNPYMYHHRAAAEPCTAMSSSIATLRLKAKQHTSGFSSPYSASSPVSRSNSAGLSAC QYAGVTDTV 

BLOSUM62 AMINO ACIDS DISTANCE MATRIX A C D E F G H I K L M N P Q R S T V W Y A 8 C 4 13 D 2 1 10 E 3 0 6 9 F 2 2 1 1 10 G 4 1 3 2 1 10 H 2 1 3 4 3 2 12 I 3 3 1 1 4 0 1 8 K 3 1 3 5 1 2 3 1 9 L 3 3 0 1 4 0 1 6 2 8 M 3 3 1 2 4 1 2 5 3 6 9 N 2 1 5 4 1 4 5 1 4 1 2 10 P 3 1 3 3 0 2 2 1 3 1 2 2 11 Q 3 1 4 6 1 2 4 1 5 2 4 4 3 9 R 3 1 2 4 1 2 4 1 6 2 3 4 2 5 9 S 5 3 4 4 2 4 3 2 4 2 3 5 3 4 3 8 T 4 3 3 3 2 2 2 3 3 3 3 4 3 3 3 5 9 V 4 3 1 2 3 1 1 7 2 5 5 1 2 2 1 2 4 8 W 1 2 0 1 5 2 2 1 1 2 3 0 0 2 1 1 2 1 15 Y 2 2 1 2 7 1 6 3 2 3 3 2 1 3 2 2 2 3 6 11

BLOSUM62: Graphic of the Pairwise Motifs' Collection of DotHelix

  
Motif 1-1, Power 17.9 Homology percent 74.1 Length 135
                      KNDKKNKRQRRQRTHFTSQQL.ELE.TFSRNRYPDMSTREEIAMWTNLTEARVRVWFKNR
>PIX1_DROME  ( 256)   KNDKKNKRQRRQRTHFTSQQLQELEHTFSRNRYPDMSTREEIAMWTNLTEARVRVWFKNR
>PIX1_AG     ( 236)   KNDKKNKRQRRQRTHFTSQQLHELEQTFSRNRYPDMSTREEIAMWTNLTEARVRVWFKNR

                      RAKWRKRERN MNA .AA   ..      .     D+LYSSY YNNW.KVPSPLG.K FP
>PIX1_DROME  ( 316)   RAKWRKRERNAMNAAVAAADFKSGFGTQFMQPFADDSLYSSYPYNNWTKVPSPLGTKPFP
>PIX1_AG     ( 296)   RAKWRKRERNQMNAIAAADFKNGFGPQFVQPFADTDTLYSSYTYNNWAKVPSPLGAKTFP

                      W VNPLG+ *...+H
>PIX1_DROME  ( 376)   WPVNPLGSMVAGNHH
>PIX1_AG     ( 356)   WTVNPLGTSIVSTNH


  
Motif 1-2, Power 9.3 Homology percent 70.7 Length 41
                      PCPYTTP.NPYMY.  A     ++MSSSIATLRLKAKQH.S
>PIX1_DROME  ( 434)   PCPYTTPANPYMYRSAAEPCMSSSMSSSIATLRLKAKQHAS
>PIX1_AG     ( 417)   PCPYTTPTNPYMYHHRAAAEPCTAMSSSIATLRLKAKQHTS


  
Motif 1-3, Power 8.4 Homology percent 83.3 Length 30
                      ++GF.SPYSA SPVSRSNSAGLSACQY.GV
>PIX1_DROME  ( 474)   SAGFGSPYSAPSPVSRSNSAGLSACQYTGV
>PIX1_AG     ( 456)   TSGFSSPYSASSPVSRSNSAGLSACQYAGV


  
Motif 1-4, Power 7.6 Homology percent 81.0 Length 21
                      A*AAADFK+GFG QF+QPFAD
>PIX1_DROME  ( 330)   AVAAADFKSGFGTQFMQPFAD
>PIX1_AG     ( 309)   AIAAADFKNGFGPQFVQPFAD


  
Motif 1-5, Power 7.1 Homology percent 37.1 Length 62
                      H .. DL . * .H HH      +  HEPLEKL**WAETGDFR*+  +  . .+S*D ..
>PIX1_DROME  ( 144)   HSAGQDLVGGYSQHPHHTVVPPHTPKHEPLEKLRIWAETGDFRDSHSSMTAVANSLDSTH
>PIX1_AG     ( 115)   HHGAPDLSAHHHHHHHHHQHHHSSALHEPLEKLKLWAETGDFRENSHTGMTSVSSIDHAQ

                      *.
>PIX1_DROME  ( 204)   LN
>PIX1_AG     ( 175)   MG


  
Motif 1-6, Power 7.0 Homology percent 76.2 Length 21
                      NHHQNS*NCFNT.AS.VA..M
>PIX1_DROME  ( 388)   NHHQNSVNCFNTGASGVAVSM
>PIX1_AG     ( 369)   NHHQNSINCFNTSASSVAAGM