I.
BLASTN 2.2.15 [Oct-15-2006]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= uniprot|P41407|AZOR_ECOLI FMN-dependent NADH-azoreductase (EC
1.7.-.-) (FMN-dependent NADH-azo compound oxidoreductase) (Azo-dye
reductase).
(200 letters)
Database: pm
204 sequences; 2,269,587 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
embl|AE006061|AE006061 Pasteurella multocida subsp. multocida st... 30 0.092
embl|AE006127|AE006127 Pasteurella multocida subsp. multocida st... 27 0.60
embl|AE006075|AE006075 Pasteurella multocida subsp. multocida st... 26 1.7
embl|AE006230|AE006230 Pasteurella multocida subsp. multocida st... 25 3.0
embl|AE006153|AE006153 Pasteurella multocida subsp. multocida st... 25 3.9
embl|AE006203|AE006203 Pasteurella multocida subsp. multocida st... 24 6.6
embl|AE006175|AE006175 Pasteurella multocida subsp. multocida st... 23 8.6
>embl|AE006061|AE006061 Pasteurella multocida subsp. multocida str.
Pm70 section 28 of 204 of the complete genome.
Length = 12997
Score = 30.0 bits (66), Expect = 0.092
Identities = 24/109 (22%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Frame = -3
Query: 63 APLTPRQQEALALSDELIAELKAHDVIVIAAPMYNFNISTQLKNYFDLVARA-GVTFRYT 121
A L+ QQ+ +A++ ++ + K ++ + ++ + Q++N + R G+TF +
Sbjct: 2390 AQLSGGQQQRIAIARAVVNKPKVL-LLDESLSALDYKLRKQMQNELKALQRKLGITFIFV 2214
Query: 122 ENGPEGLVTGKKAIVITSRGGIHKDG-PTDLVTP----YLSTFLGFIGI 165
+ E +T I++ +G I +DG P ++ +++ F+G I I
Sbjct: 2213 THDQEEALTMSDRIIVLRKGHIQQDGSPREIYEEPKNLFVAKFIGEINI 2067
>embl|AE006127|AE006127 Pasteurella multocida subsp. multocida str.
Pm70 section 94 of 204 of the complete genome.
Length = 10747
Score = 27.3 bits (59), Expect = 0.60
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 1/96 (1%)
Frame = -1
Query: 39 VRDL-AANPIPVLDGELVGALRPSDAPLTPRQQEALALSDELIAELKAHDVIVIAAPMYN 97
VRDL N P+L E + A+ P + + L ++ ++I + P++
Sbjct: 4003 VRDLYTLNFNPILSWEEMQAVYQEIIPAEVKFEHQL---------IEQANLITLVYPLWW 3851
Query: 98 FNISTQLKNYFDLVARAGVTFRYTENGPEGLVTGKK 133
LK Y D V G ++ GL+ GKK
Sbjct: 3850 MGFPAILKGYLDRVLSYGFAYKTENEQSVGLLGGKK 3743
>embl|AE006075|AE006075 Pasteurella multocida subsp. multocida str.
Pm70 section 42 of 204 of the complete genome.
Length = 12233
Score = 25.8 bits (55), Expect = 1.7
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = +1
Query: 97 NFNISTQLKNYFDLVARAGVTFRYTENGPEGLVTGKKAIVITSRGGIHKDGPT 149
N++I+ + K Y D + + + GP+G T ++I++ + +HK T
Sbjct: 1195 NYDINDKAKVYTDFI--------WAKEGPKGATTRDRSIILGAGYKLHKQVET 1329
>embl|AE006230|AE006230 Pasteurella multocida subsp. multocida str.
Pm70 section 197 of 204 of the complete genome.
Length = 10325
Score = 25.0 bits (53), Expect = 3.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 62 DAPLTPRQQEALALSDELIAELKAHDVIV 90
D P T ++ E LAL DEL A+ ++V
Sbjct: 3412 DLPETTQESELLALIDELNADTTVDGILV 3498
>embl|AE006153|AE006153 Pasteurella multocida subsp. multocida str.
Pm70 section 120 of 204 of the complete genome.
Length = 13164
Score = 24.6 bits (52), Expect = 3.9
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = +1
Query: 7 KSSILAGYSQSNQLSDYFVEQ---WREKH 32
K + L GYS + +L+DY V + +R+ H
Sbjct: 5401 KEAALKGYSNATELADYLVAKGVPFRDSH 5487
>embl|AE006203|AE006203 Pasteurella multocida subsp. multocida str.
Pm70 section 170 of 204 of the complete genome.
Length = 10697
Score = 23.9 bits (50), Expect = 6.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 73 LALSDELIAELKAHDVIVIAAPMYNFNIS 101
+ +S L E+KAH I+ P++ FNI+
Sbjct: 5670 IKMSPHLTKEMKAHFSILS**PLHRFNIA 5584
>embl|AE006175|AE006175 Pasteurella multocida subsp. multocida str.
Pm70 section 142 of 204 of the complete genome.
Length = 9799
Score = 23.5 bits (49), Expect = 8.6
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 66 TPRQQEALALSDELIAELKAHDVIVIAA 93
+P +EAL LSD L A D V+AA
Sbjct: 6232 SPDGEEALKLSDSLFRGTPAQDPQVMAA 6149
Database: pm
Posted date: Oct 3, 2007 3:51 PM
Number of letters in database: 2,269,587
Number of sequences in database: 204
Lambda K H
0.318 0.136 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 204
Number of Hits to DB: 367,703
Number of extensions: 4260
Number of successful extensions: 30
Number of sequences better than 10.0: 7
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 7
Length of query: 200
Length of database: 756,529
Length adjustment: 77
Effective length of query: 123
Effective length of database: 740,821
Effective search space: 91120983
Effective search space used: 91120983
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 44 (21.6 bits)
II.TBLASTN 2.2.15 [Oct-15-2006]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= uniprot|P41407|AZOR_ECOLI FMN-dependent NADH-azoreductase (EC
1.7.-.-) (FMN-dependent NADH-azo compound oxidoreductase) (Azo-dye
reductase).
(200 letters)
Database: st
220 sequences; 4,870,572 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE008772 AE006468 |AE008772| Salmonella typhimurium LT2, section... 328 3e-91
>AE008772 AE006468 |AE008772| Salmonella typhimurium LT2, section 76 of
220 of the complete genome.
Length = 20609
Score = 328 bits (841), Expect = 3e-91
Identities = 159/182 (87%), Positives = 172/182 (94%)
Frame = +2
Query: 1 SKVLVLKSSILAGYSQSNQLSDYFVEQWREKHSADEITVRDLAANPIPVLDGELVGALRP 60
SKVLVLKSSILAGYSQS QL+DYF+EQWREKH ADEITVRDLAANP+PVLDGELVGA+RP
Sbjct: 16109 SKVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDLAANPVPVLDGELVGAMRP 16288
Query: 61 SDAPLTPRQQEALALSDELIAELKAHDVIVIAAPMYNFNISTQLKNYFDLVARAGVTFRY 120
DAPLTPRQQ+ALALSDELIAELKAHDVIVIAAPMYNFNI TQLKNYFDL+ARAG+TFRY
Sbjct: 16289 GDAPLTPRQQDALALSDELIAELKAHDVIVIAAPMYNFNIPTQLKNYFDLIARAGITFRY 16468
Query: 121 TENGPEGLVTGKKAIVITSRGGIHKDGPTDLVTPYLSTFLGFIGITDVKFVFAEGIAYGP 180
TE GPEGLVTGK+A+V++SRGGIHKD PTDL+ PYL FLGFIGITDV FVFAEGIAYGP
Sbjct: 16469 TEKGPEGLVTGKRAVVLSSRGGIHKDTPTDLIAPYLKVFLGFIGITDVNFVFAEGIAYGP 16648
Query: 181 EM 182
E+
Sbjct: 16649 EV 16654
Database: st
Posted date: Oct 3, 2007 3:50 PM
Number of letters in database: 4,870,572
Number of sequences in database: 220
Lambda K H
0.318 0.136 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 220
Number of Hits to DB: 898,738
Number of extensions: 12132
Number of successful extensions: 45
Number of sequences better than 1.0e-03: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 1
Length of query: 200
Length of database: 1,623,524
Length adjustment: 82
Effective length of query: 118
Effective length of database: 1,605,484
Effective search space: 189447112
Effective search space used: 189447112
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)
III.
TBLASTN 2.2.15 [Oct-15-2006]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= uniprot|P41407|AZOR_ECOLI FMN-dependent NADH-azoreductase (EC
1.7.-.-) (FMN-dependent NADH-azo compound oxidoreductase) (Azo-dye
reductase).
(200 letters)
Database: xc
460 sequences; 5,103,728 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE012097 AE008922 |AE012097| Xanthomonas campestris pv. campestr... 87 4e-25
>AE012097 AE008922 |AE012097| Xanthomonas campestris pv. campestris
str. ATCC 33913, section 5 of 460 of the complete
genome.
Length = 10564
Score = 87.4 bits (215), Expect(2) = 4e-25
Identities = 52/121 (42%), Positives = 69/121 (57%), Gaps = 5/121 (4%)
Frame = +1
Query: 66 TPRQQEALALSDELIAELKAHDVIVIAAPMYNFNISTQLKNYFDLVARAGVTFRYTENGP 125
TP LAL +++ E D +VI +YNF ISTQLK + D V AG TFRYT G
Sbjct: 5836 TPELANDLALGVQVLQEFLDADTVVIGVALYNFTISTQLKAWIDRVLVAGKTFRYTAEGA 6015
Query: 126 -EGLVTGKKAIVITSRGGIHKDG-PT---DLVTPYLSTFLGFIGITDVKFVFAEGIAYGP 180
EGL K+ I+ +RGG + +G PT + Y+ LGF+G+ + V AEG+A GP
Sbjct: 6016 LEGLAGNKRVILAVARGGRYGEGSPTAALEHAETYMRAALGFVGLHQPEVVVAEGLALGP 6195
Query: 181 E 181
E
Sbjct: 6196 E 6198
Score = 42.0 bits (97), Expect(2) = 4e-25
Identities = 29/68 (42%), Positives = 38/68 (55%)
Frame = +2
Query: 2 KVLVLKSSILAGYSQSNQLSDYFVEQWREKHSADEITVRDLAANPIPVLDGELVGALRPS 61
K+L L SSIL YS S QL+ V + + A + T RDLAANPI L G + A +
Sbjct: 5645 KLLHLDSSILGDYSASRQLTASIVAKLQAADPALQYTYRDLAANPIGHLSGAHLAAAQ-- 5818
Query: 62 DAPLTPRQ 69
+ P T R+
Sbjct: 5819 NPPATRRR 5842
Database: xc
Posted date: Oct 3, 2007 3:50 PM
Number of letters in database: 5,103,728
Number of sequences in database: 460
Lambda K H
0.318 0.136 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 460
Number of Hits to DB: 1,006,697
Number of extensions: 15030
Number of successful extensions: 86
Number of sequences better than 1.0e-03: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 2
Length of query: 200
Length of database: 1,701,242
Length adjustment: 83
Effective length of query: 117
Effective length of database: 1,663,062
Effective search space: 194578254
Effective search space used: 194578254
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 44 (21.6 bits)
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