Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.cmm.msu.ru/~plazmoliz/Term3/sup/swiss_result.txt Дата изменения: Sat Nov 8 13:14:54 2008 Дата индексирования: Wed Jan 14 00:57:01 2009 Кодировка:

BLASTP 2.2.15 [Oct-15-2006]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= swissprot|P0A7B8|HSLV_ECOLI ATP-dependent protease hslV;
(176 letters)

Database: orf
13 sequences; 610 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

D89965_13 216 3e-61
D89965_5 15 1.4

>D89965_13
Length = 125

Score = 216 bits (550), Expect = 3e-61
Identities = 113/125 (90%), Positives = 113/125 (90%)

Query: 1 MTTIVSVRRNGHVVIAGDGQATLGNTVMKGNVKKVRRLYNDKVIXXXXXXXXXXXXLFEL 60
MTTIVSVRRNGHVVIAGDGQATLGNTVMKGNVKKVRRLYNDKVI LFEL
Sbjct: 1 MTTIVSVRRNGHVVIAGDGQATLGNTVMKGNVKKVRRLYNDKVIAGFAGGTADAFTLFEL 60

Query: 61 FERKLEMHQGHLVKAAVELAKDWRTDRMLRKLEALLAVADETASLIITGNGDVVQPENDL 120
FERKLEMHQGHLVKAAVELAKDWRTDRMLRKLEALLAVADETASLIITGNGDVVQPENDL
Sbjct: 61 FERKLEMHQGHLVKAAVELAKDWRTDRMLRKLEALLAVADETASLIITGNGDVVQPENDL 120

Query: 121 IAIGS 125
IAIGS
Sbjct: 121 IAIGS 125


>D89965_5
Length = 138

Score = 15.0 bits (27), Expect = 1.4
Identities = 4/7 (57%), Positives = 5/7 (71%)

Query: 12 HVVIAGD 18
HV + GD
Sbjct: 7 HVTVTGD 13


Database: orf
Posted date: Nov 8, 2008 12:57 PM
Number of letters in database: 610
Number of sequences in database: 13

Lambda K H
0.318 0.134 0.372

Gapped
Lambda K H
0.267 0.0410 0.140


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13
Number of Hits to DB: 251
Number of extensions: 5
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 176
Length of database: 610
Length adjustment: 23
Effective length of query: 153
Effective length of database: 311
Effective search space: 47583
Effective search space used: 47583
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 20 (12.1 bits)
S2: 20 (12.3 bits)