Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.cmm.msu.ru/~plazmoliz/Term3/sup/pyr_D.txt Дата изменения: Sat Oct 25 16:55:24 2008 Дата индексирования: Tue Oct 2 17:21:14 2012 Кодировка:

TBLASTN 2.2.15 [Oct-15-2006]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= PYRD_ECOLI Dihydroorotate dehydrogenase
(336 letters)

Database: pmu
204 sequences; 2,269,587 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

embl|AE006098|AE006098 Pasteurella multocida subsp. multocida st... 399 e-113

>embl|AE006098|AE006098 Pasteurella multocida subsp. multocida str.
Pm70 section 65 of 204 of the complete genome.
Length = 10687

Score = 399 bits (1026), Expect = e-113
Identities = 202/337 (59%), Positives = 246/337 (72%), Gaps = 3/337 (0%)
Frame = -3

Query: 3 YPFVRKALFQLDPERAHEFTFQQLRRITGTPFEALVRQKVPA---KPVNCMGLTFKNPLG 59
Y +RKALF LD E+AH+ T + L+ + +PF L++ P MGL FKNP+G
Sbjct: 5999 YALIRKALFSLDAEQAHDLTIKTLKTLGRSPFNPLLKTLFACPTGSPKTIMGLHFKNPIG 5820

Query: 60 LAAGLDKDGECIDALGAMGFGSIEIGTVTPRPQPGNDKPRLFRLVDAEGLINRMGFNNLG 119
LAAG DK+GE I+ AMGFG IE+GTVTP Q GN KPR FRL +AEG+INR GFNN G
Sbjct: 5819 LAAGADKNGEAIEGFAAMGFGFIEVGTVTPLAQEGNPKPRQFRLPEAEGIINRNGFNNYG 5640

Query: 120 VDNLVENVKKAHYDGVLGINIGKNKDTPVEQGKDDYLICMEKXXXXXXXXXXNISSPNTP 179
+D L+ENVK A+YDG+LGINIGKN T VE GK DYLIC+ K NISSPN+P
Sbjct: 5639 IDYLIENVKHANYDGILGINIGKNTFTSVENGKADYLICLNKAYHYADYITINISSPNSP 5460

Query: 180 GLRTLQYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKIAPDLSEEELIQVADSLVRHNI 239
GLR LQYGEAL+DLL +K +Q DL + KYVPIAVKIAPDL+E E++Q+AD+L RH +
Sbjct: 5459 GLRQLQYGEALEDLLQGVKARQKDLAEQYQKYVPIAVKIAPDLTEGEVVQIADTLQRHKM 5280

Query: 240 DGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGID 299
D VIATNTT+ R V G++N +Q GGLSG+PLQ KSTEII RL EL G++PIIG GGID
Sbjct: 5279 DAVIATNTTISRDTVSGLQNAEQQGGLSGKPLQQKSTEIIARLHQELKGQIPIIGSGGID 5100

Query: 300 SVIAAREKIAAGASLVQIYSGFIFKGPPLIKEIVTHI 336
SV A+EKI AGA L+Q+YSG I+ GP LIK++V I
Sbjct: 5099 SVANAQEKIKAGAELLQLYSGLIYHGPHLIKQLVQQI 4989


Database: pmu
Posted date: Oct 25, 2008 5:06 PM
Number of letters in database: 2,269,587
Number of sequences in database: 204

Lambda K H
0.319 0.140 0.405

Gapped
Lambda K H
0.267 0.0410 0.140


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 204
Number of Hits to DB: 697,447
Number of extensions: 8597
Number of successful extensions: 27
Number of sequences better than 1.0e-03: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 756,529
Length adjustment: 82
Effective length of query: 254
Effective length of database: 739,801
Effective search space: 187909454
Effective search space used: 187909454
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)