Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.cmm.msu.ru/~pavel_s/term3/pm_result.txt Дата изменения: Sun Oct 1 14:52:37 2006 Дата индексирования: Tue Oct 2 10:59:10 2012 Кодировка:

TBLASTN 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= aroE description
(272 letters)

Database: pm
204 sequences; 2,269,587 total letters

Searching.done

Score E
Sequences producing significant alignments: (bits) Value

embl|AE006166|AE006166 Pasteurella multocida subsp. multocida st... 243 6e-66
embl|AE006179|AE006179 Pasteurella multocida subsp. multocida st... 67 1e-12
embl|AE006081|AE006081 Pasteurella multocida subsp. multocida st... 25 4.6

>embl|AE006166|AE006166 Pasteurella multocida subsp. multocida str.
Pm70 section 133 of 204 of the complete genome.
Length = 11061

Score = 243 bits (621), Expect = 6e-66
Identities = 130/266 (48%), Positives = 165/266 (62%), Gaps = 1/266 (0%)
Frame = +1

Query: 1 METYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANV 60
M+ YAV+GNPIA SKSP IHQ FA Q + Y +L DF L FF G KG N+
Sbjct: 1810 MDKYAVWGNPIAQSKSPQIHQIFANQTQQQMEYVAMLGDEQDFEQQLRVFFEKGAKGCNI 1989

Query: 61 TVPFKEEAFARADELTERAALAGAVNTLMRLEDGRLLGDNTDGVGLLSDLERLSFXXXXX 120
T PFKE AF AD +ER A A NTL +L+DGRL GDNTDG GL+SDL+RL +
Sbjct: 1990 TAPFKERAFQLADLHSERCLTAEACNTLKKLDDGRLYGDNTDGAGLVSDLQRLGWLKPEQ 2169

Query: 121 XXXXXXXXXXSRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHE 180
++GVLLPLL + + NRT+S+AE+LA+ FA G IQA+ +D +
Sbjct: 2170 TILILGAGGATKGVLLPLLQAKQHIVLANRTLSKAEDLAQKFAQYGQIQAVELDNIPVQS 2349

Query: 181 FDLIINATSSGISGDIPAIPSSLIHPGIYCYDMFYQK-GKTPFLAWCEQRGSKRNADGLG 239
FDLIINATSSG+ G + ++ YDM Y K TPF+A C+Q G + +DG G
Sbjct: 2350 FDLIINATSSGLHGQTVQMNPEILQNATALYDMQYAKQADTPFVALCKQLGKQNVSDGFG 2529

Query: 240 MLVAQAAHAFLLWHGVLPDVEPVIKQ 265
MLVAQAAHAF LW GV+P+ E +++Q
Sbjct: 2530 MLVAQAAHAFHLWRGVMPEFEALLEQ 2607


>embl|AE006179|AE006179 Pasteurella multocida subsp. multocida str.
Pm70 section 146 of 204 of the complete genome.
Length = 11375

Score = 66.6 bits (161), Expect = 1e-12
Identities = 56/236 (23%), Positives = 104/236 (44%), Gaps = 3/236 (1%)
Frame = -1

Query: 20 HQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVTVPFKEEAFARADELTERA 79
H Q+L + + Y +D + + + G +G V++PFKE DE++ A
Sbjct: 6710 HNYLYQKLGLNYIYKAFTT--SDIEHAVKGVRALGIRGCAVSMPFKESCMPFLDEISASA 6537

Query: 80 ALAGAVNTLMRLEDGRLLGDNTDGVGLLSDLERLSFXXXXXXXXXXXXXXXSRGVLLPLL 139
+VNT++ EDG L NTD + + +++ V
Sbjct: 6536 KAIESVNTIVN-EDGYLKAYNTDYIAISKLIQQYQLDKHHKVIVQGSGGMAKAVVAAFKN 6360

Query: 140 SLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGISG---DI 196
+ +++ R + + LA L+ + ++ LEG+E +++NAT G+SG +
Sbjct: 6359 AGFHDLSVYARNATTGQYLANLYGYQ------YINHLEGNEASILVNATPMGMSGGEENT 6198

Query: 197 PAIPSSLIHPGIYCYDMFYQKGKTPFLAWCEQRGSKRNADGLGMLVAQAAHAFLLW 252
A P SLI +D+ +TP + + +Q+ +K+ G ++V QA F L+
Sbjct: 6197 LAFPESLIEQASSIFDVVALPAETPLIQYAKQQ-NKQTISGAEVIVLQAVEQFELY 6033


>embl|AE006081|AE006081 Pasteurella multocida subsp. multocida str.
Pm70 section 48 of 204 of the complete genome.
Length = 11341

Score = 25.0 bits (53), Expect = 4.6
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 11/36 (30%)
Frame = +1

Query: 189 SSGISGDIPAIPS-----------SLIHPGIYCYDM 213
S G GD+ IP+ S +HP IYC+D+
Sbjct: 5266 SGGYFGDLYFIPTHFLLCFNHFL*SHLHPNIYCWDV 5373


Database: pm
Posted date: Oct 1, 2006 1:36 PM
Number of letters in database: 2,269,587
Number of sequences in database: 204

Lambda K H
0.320 0.136 0.401

Gapped
Lambda K H
0.267 0.0410 0.140


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 579,010
Number of Sequences: 204
Number of extensions: 7313
Number of successful extensions: 40
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 21
length of query: 272
length of database: 756,529
effective HSP length: 80
effective length of query: 192
effective length of database: 740,209
effective search space: 142120128
effective search space used: 142120128
frameshift window, decay const: 40, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)