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BLASTN 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= U00096 U00096.2 Escherichia coli K12 MG1655, complete genome.
(85 letters)

Database: bs
1 sequences; 4,214,630 total letters

Searching.done

Score E
Sequences producing significant alignments: (bits) Value

AL009126_GR|AL009126_GR Bacillus subtilis (strain 168) chromosom... 30 0.24

>AL009126_GR|AL009126_GR Bacillus subtilis (strain 168) chromosome, complete
sequence.
Length = 4214630

Score = 30.2 bits (15), Expect = 0.24
Identities = 18/19 (94%)
Strand = Plus / Minus


Query: 56 tcgaaggttcgaatccttc 74
|||||||||||| ||||||
Sbjct: 4154186 tcgaaggttcgagtccttc 4154168



Score = 30.2 bits (15), Expect = 0.24
Identities = 18/19 (94%)
Strand = Plus / Minus


Query: 56 tcgaaggttcgaatccttc 74
|||||||||||| ||||||
Sbjct: 3172577 tcgaaggttcgagtccttc 3172559



Score = 30.2 bits (15), Expect = 0.24
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 56 tcgaaggttcgaatccttc 74
|||||||||||| ||||||
Sbjct: 528694 tcgaaggttcgagtccttc 528712



Score = 30.2 bits (15), Expect = 0.24
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 56 tcgaaggttcgaatccttc 74
|||||||||||| ||||||
Sbjct: 95610 tcgaaggttcgagtccttc 95628



Score = 26.3 bits (13), Expect = 3.7
Identities = 13/13 (100%)
Strand = Plus / Minus


Query: 38 aatctgccgtcat 50
|||||||||||||
Sbjct: 4030555 aatctgccgtcat 4030543



Score = 26.3 bits (13), Expect = 3.7
Identities = 13/13 (100%)
Strand = Plus / Minus


Query: 37 aaatctgccgtca 49
|||||||||||||
Sbjct: 3526386 aaatctgccgtca 3526374



Score = 26.3 bits (13), Expect = 3.7
Identities = 13/13 (100%)
Strand = Plus / Minus


Query: 64 tcgaatccttccc 76
|||||||||||||
Sbjct: 3287760 tcgaatccttccc 3287748



Score = 26.3 bits (13), Expect = 3.7
Identities = 13/13 (100%)
Strand = Plus / Minus


Query: 60 aggttcgaatcct 72
|||||||||||||
Sbjct: 3172118 aggttcgaatcct 3172106



Score = 26.3 bits (13), Expect = 3.7
Identities = 13/13 (100%)
Strand = Plus / Minus


Query: 60 aggttcgaatcct 72
|||||||||||||
Sbjct: 3171142 aggttcgaatcct 3171130



Score = 26.3 bits (13), Expect = 3.7
Identities = 13/13 (100%)
Strand = Plus / Plus


Query: 11 ccgagcggccaaa 23
|||||||||||||
Sbjct: 2488616 ccgagcggccaaa 2488628



Score = 26.3 bits (13), Expect = 3.7
Identities = 13/13 (100%)
Strand = Plus / Plus


Query: 60 aggttcgaatcct 72
|||||||||||||
Sbjct: 950965 aggttcgaatcct 950977



Score = 26.3 bits (13), Expect = 3.7
Identities = 13/13 (100%)
Strand = Plus / Plus


Query: 45 cgtcatcgacttc 57
|||||||||||||
Sbjct: 918785 cgtcatcgacttc 918797



Score = 26.3 bits (13), Expect = 3.7
Identities = 13/13 (100%)
Strand = Plus / Minus


Query: 39 atctgccgtcatc 51
|||||||||||||
Sbjct: 882884 atctgccgtcatc 882872



Score = 26.3 bits (13), Expect = 3.7
Identities = 13/13 (100%)
Strand = Plus / Plus


Query: 60 aggttcgaatcct 72
|||||||||||||
Sbjct: 528314 aggttcgaatcct 528326



Score = 26.3 bits (13), Expect = 3.7
Identities = 13/13 (100%)
Strand = Plus / Plus


Query: 60 aggttcgaatcct 72
|||||||||||||
Sbjct: 166218 aggttcgaatcct 166230



Score = 26.3 bits (13), Expect = 3.7
Identities = 13/13 (100%)
Strand = Plus / Plus


Query: 60 aggttcgaatcct 72
|||||||||||||
Sbjct: 165802 aggttcgaatcct 165814



Score = 26.3 bits (13), Expect = 3.7
Identities = 13/13 (100%)
Strand = Plus / Plus


Query: 60 aggttcgaatcct 72
|||||||||||||
Sbjct: 96108 aggttcgaatcct 96120



Score = 26.3 bits (13), Expect = 3.7
Identities = 13/13 (100%)
Strand = Plus / Plus


Query: 21 aaagggagcagac 33
|||||||||||||
Sbjct: 77230 aaagggagcagac 77242


Database: bs
Posted date: Oct 2, 2006 6:34 PM
Number of letters in database: 4,214,630
Number of sequences in database: 1

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 134
Number of Sequences: 1
Number of extensions: 134
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of query: 85
length of database: 4,214,630
effective HSP length: 14
effective length of query: 71
effective length of database: 4,214,616
effective search space: 299237736
effective search space used: 299237736
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)