Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.cmm.msu.ru/~miss_lazy/term1/text/contacts.spt
Дата изменения: Wed Feb 10 18:32:06 2010
Дата индексирования: Tue Oct 2 18:34:41 2012
Кодировка:
zap
pause
load H:\Term1\Block3\Practices\Practice 12\1OYG.pdb
pause
background white
pause
restrict PHE231
pause
select within (5.0, phe231 and sidechain)
spacefill 100
pause
echo These atoms belong to the residues, we should consider
pause
zap
pause
load H:\Term1\Block3\Practices\Practice 12\1OYG.pdb
restrict phe231 or tyr237 or ile232 or gln230 or asn236
pause
select Tyr237:A.CA or Tyr187:A.C or Tyr187:A.CB or Ile232:A.CA or Gln230:A.CA or Asn236:A.N
spacefill 100
pause
select phe231
spacefill 50
wireframe 100
pause

select Phe231:A.CA
label 231
pause
select tyr237 or tyr187 or ile232 or gln230 or asn236
wireframe 50
pause
select Tyr237:A.CA
label --------Tyr237:A.CA
pause
select Tyr187:A.C
label ----------Tyr187:A.C
pause
select Tyr187:A.CB
label ----------Tyr187:A.CB
pause
select Ile232:A.CA
label -------Ile232:A.CA
pause
select Ile232:A.CA
label ----------Ile232:A.CA
pause
select Asn236:A.N
label --------Asn236:A.N
pause
colour cpk
pause
zoom 200
pause
zap
pause
load H:\Term1\Block3\Practices\Practice 12\1OYG.pdb
pause
restrict Ser238
pause
select within (3.5, ser238 and sidechain) and oxygen
spacefill 100
pause
zoom 400
pause
centre ser238
pause
restrict ser238 or gly235
pause
select ser238 or gly235
wireframe 50
pause
select ser238:A.OG
label ser238:A.OG
pause
select gly235:A.O
label gly235:A.O
pause
zap
pause
load H:\Term1\Block3\Practices\Practice 12\1OYG.pdb
pause
restrict his49
pause
select within (3.5, his49 and sidechain) and nitrogen
spacefill 100
pause
zoom 400
pause
centre his49
pause
restrict his49 or asp50
pause
select his49 or asp50
wireframe 50
pause
select asp50:A.N
label ----------asp50:A.N
pause
select his49:A.ND1
label ---------his49:A.ND1
pause
zap
pause
load H:\Term1\Block3\Practices\Practice 12\1OYG.pdb
pause
ssbonds 50
pause
zap
pause
load P:\y09\Term1\Practice14\1zni.ent
pause
ssbonds 50
pause
background blue
pause


zap
pause
load H:\Term1\Block3\Practices\Practice 12\1OYG.pdb
pause
restrict Ca
pause
zoom 200
pause
spacefill 200
pause
zoom 800
pause
color green
pause
label Ca
pause
select within (5.0, Ca)
spacefill 100
pause
restrict Gln272:A.OE1 or Ca or Asp339:A.OD2
pause
select Ca
label Ca
pause
select Gln272:A.OE1
label ----Gln272:A.OE1
pause
select Asp339:A.OD2
label ----Asp339:A.OD2
select