Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.cmm.msu.ru/~miss_lazy/term1/text/contacts.spt Дата изменения: Wed Feb 10 18:32:06 2010 Дата индексирования: Tue Oct 2 18:34:41 2012 Кодировка:

zap
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load H:\Term1\Block3\Practices\Practice 12\1OYG.pdb
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background white
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restrict PHE231
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select within (5.0, phe231 and sidechain)
spacefill 100
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echo These atoms belong to the residues, we should consider
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zap
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load H:\Term1\Block3\Practices\Practice 12\1OYG.pdb
restrict phe231 or tyr237 or ile232 or gln230 or asn236
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select Tyr237:A.CA or Tyr187:A.C or Tyr187:A.CB or Ile232:A.CA or Gln230:A.CA or Asn236:A.N
spacefill 100
pause
select phe231
spacefill 50
wireframe 100
pause

select Phe231:A.CA
label 231
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select tyr237 or tyr187 or ile232 or gln230 or asn236
wireframe 50
pause
select Tyr237:A.CA
label --------Tyr237:A.CA
pause
select Tyr187:A.C
label ----------Tyr187:A.C
pause
select Tyr187:A.CB
label ----------Tyr187:A.CB
pause
select Ile232:A.CA
label -------Ile232:A.CA
pause
select Ile232:A.CA
label ----------Ile232:A.CA
pause
select Asn236:A.N
label --------Asn236:A.N
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colour cpk
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zoom 200
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zap
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load H:\Term1\Block3\Practices\Practice 12\1OYG.pdb
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restrict Ser238
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select within (3.5, ser238 and sidechain) and oxygen
spacefill 100
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zoom 400
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centre ser238
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restrict ser238 or gly235
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select ser238 or gly235
wireframe 50
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select ser238:A.OG
label ser238:A.OG
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select gly235:A.O
label gly235:A.O
pause
zap
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load H:\Term1\Block3\Practices\Practice 12\1OYG.pdb
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restrict his49
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select within (3.5, his49 and sidechain) and nitrogen
spacefill 100
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zoom 400
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centre his49
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restrict his49 or asp50
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select his49 or asp50
wireframe 50
pause
select asp50:A.N
label ----------asp50:A.N
pause
select his49:A.ND1
label ---------his49:A.ND1
pause
zap
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load H:\Term1\Block3\Practices\Practice 12\1OYG.pdb
pause
ssbonds 50
pause
zap
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load P:\y09\Term1\Practice14\1zni.ent
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ssbonds 50
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background blue
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zap
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load H:\Term1\Block3\Practices\Practice 12\1OYG.pdb
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restrict Ca
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zoom 200
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spacefill 200
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zoom 800
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color green
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label Ca
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select within (5.0, Ca)
spacefill 100
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restrict Gln272:A.OE1 or Ca or Asp339:A.OD2
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select Ca
label Ca
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select Gln272:A.OE1
label ----Gln272:A.OE1
pause
select Asp339:A.OD2
label ----Asp339:A.OD2
select