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NAME
pdb2img - generate a block representation image from a PDB file
SYNOPSIS
pdb2img [OPTION] [-s=factor] PDBFILE OUTFILE
DESCRIPTION
generate a block representation of base or peptide bond in PS, XFIG
or Raster3D format. The six faces of each block can also be shown in
different styles, resulting in much more revealing presentation than
an atomic model. With Raster3D input, these blocks can be combined
with other schematic representations (e.g., from MolScript)
-f generate an XFIG file
-r generate an input to render of Raster3D
-n without header for Raster3D (with -r)
-p block representation for peptide bond
-c color image
-i identical style for the 6 faces of each block
-u up-down faces instead of minor/major groove faces
-m minor groove plus identical 5 other sides
-s=factor set scale factor (to put image in the same scale)
-b draw a boundary frame around image
-h this help message (any non-recognized options will do)
INPUT
PDB file
One-letter options can be in either case, any order and combined
EXAMPLES
pdb2img -bcu sample.pdb sample.ps
pdb2img -fc sample.pdb sample.fig
pdb2img -rc sample.pdb stdout | render -jpeg > sample.jpg
OUTPUT
PS, XFIG or Raster3D input file
bblk_lkg.alc, pblk_lkg.alc
SEE ALSO
r3d_atom, alc2img, stack2img, blocview
AUTHOR
Written by Xiang-Jun Lu at Wilma K. Olson Laboratory at Rutgers
Check URL: http://rutchem.rutgers.edu/~xiangjun/3DNA/
Report bugs to
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