Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.cmm.msu.ru/~mashunia/l19201.out Дата изменения: Sun Dec 27 23:56:19 2009 Дата индексирования: Tue Oct 2 00:30:21 2012 Кодировка:

BLASTN 2.2.21 [Jun-14-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= L19201 L19201.1 E. coli chromosomal region from 87.2 to 89.2
minutes.
(963 letters)

Database: pm
204 sequences; 2,269,587 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

AE006114 Pasteurella multocida subsp. multocida str. Pm70 sectio... 36 0.028
AE006170 Pasteurella multocida subsp. multocida str. Pm70 sectio... 32 0.43
AE006151 Pasteurella multocida subsp. multocida str. Pm70 sectio... 32 0.43
AE006113 Pasteurella multocida subsp. multocida str. Pm70 sectio... 32 0.43
AE006207 Pasteurella multocida subsp. multocida str. Pm70 sectio... 30 1.7
AE006098 Pasteurella multocida subsp. multocida str. Pm70 sectio... 30 1.7
AE006096 Pasteurella multocida subsp. multocida str. Pm70 sectio... 30 1.7
AE006228 Pasteurella multocida subsp. multocida str. Pm70 sectio... 28 6.7
AE006179 Pasteurella multocida subsp. multocida str. Pm70 sectio... 28 6.7
AE006174 Pasteurella multocida subsp. multocida str. Pm70 sectio... 28 6.7
AE006156 Pasteurella multocida subsp. multocida str. Pm70 sectio... 28 6.7
AE006122 Pasteurella multocida subsp. multocida str. Pm70 sectio... 28 6.7
AE006086 Pasteurella multocida subsp. multocida str. Pm70 sectio... 28 6.7
AE006052 Pasteurella multocida subsp. multocida str. Pm70 sectio... 28 6.7
AE006042 Pasteurella multocida subsp. multocida str. Pm70 sectio... 28 6.7

>AE006114 Pasteurella multocida subsp. multocida str. Pm70 section 81
of 204 of the complete genome.
Length = 7433

Score = 36.2 bits (18), Expect = 0.028
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 900 tatcgaaaacatgaagcg 917
||||||||||||||||||
Sbjct: 5351 tatcgaaaacatgaagcg 5368


>AE006170 Pasteurella multocida subsp. multocida str. Pm70 section 137
of 204 of the complete genome.
Length = 11019

Score = 32.2 bits (16), Expect = 0.43
Identities = 16/16 (100%)
Strand = Plus / Minus


Query: 250 gccgtggctatcgaaa 265
||||||||||||||||
Sbjct: 10089 gccgtggctatcgaaa 10074


>AE006151 Pasteurella multocida subsp. multocida str. Pm70 section 118
of 204 of the complete genome.
Length = 10890

Score = 32.2 bits (16), Expect = 0.43
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 273 aaaacgtggtatcgac 288
||||||||||||||||
Sbjct: 9497 aaaacgtggtatcgac 9512


>AE006113 Pasteurella multocida subsp. multocida str. Pm70 section 80
of 204 of the complete genome.
Length = 14009

Score = 32.2 bits (16), Expect = 0.43
Identities = 16/16 (100%)
Strand = Plus / Minus


Query: 608 taaacgaaatcaaagc 623
||||||||||||||||
Sbjct: 9538 taaacgaaatcaaagc 9523


>AE006207 Pasteurella multocida subsp. multocida str. Pm70 section 174
of 204 of the complete genome.
Length = 10499

Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Minus


Query: 472 tcttcttctcaccag 486
|||||||||||||||
Sbjct: 1905 tcttcttctcaccag 1891


>AE006098 Pasteurella multocida subsp. multocida str. Pm70 section 65
of 204 of the complete genome.
Length = 10687

Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Minus


Query: 721 cgtgaaacccgcgca 735
|||||||||||||||
Sbjct: 1526 cgtgaaacccgcgca 1512


>AE006096 Pasteurella multocida subsp. multocida str. Pm70 section 63
of 204 of the complete genome.
Length = 10591

Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Minus


Query: 383 acaacgacatcaaag 397
|||||||||||||||
Sbjct: 1566 acaacgacatcaaag 1552


>AE006228 Pasteurella multocida subsp. multocida str. Pm70 section 195
of 204 of the complete genome.
Length = 10684

Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Minus


Query: 613 gaaatcaaagcggg 626
||||||||||||||
Sbjct: 7114 gaaatcaaagcggg 7101


>AE006179 Pasteurella multocida subsp. multocida str. Pm70 section 146
of 204 of the complete genome.
Length = 11375

Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus


Query: 698 atttcatcgagaaa 711
||||||||||||||
Sbjct: 6550 atttcatcgagaaa 6563


>AE006174 Pasteurella multocida subsp. multocida str. Pm70 section 141
of 204 of the complete genome.
Length = 11211

Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Minus


Query: 274 aaacgtggtatcga 287
||||||||||||||
Sbjct: 9848 aaacgtggtatcga 9835


>AE006156 Pasteurella multocida subsp. multocida str. Pm70 section 123
of 204 of the complete genome.
Length = 13495

Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Minus


Query: 331 atgcgtctgaccga 344
||||||||||||||
Sbjct: 6914 atgcgtctgaccga 6901


>AE006122 Pasteurella multocida subsp. multocida str. Pm70 section 89 of
204 of the complete genome.
Length = 12428

Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus


Query: 607 gtaaacgaaatcaa 620
||||||||||||||
Sbjct: 12200 gtaaacgaaatcaa 12213


>AE006086 Pasteurella multocida subsp. multocida str. Pm70 section 53
of 204 of the complete genome.
Length = 8504

Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Minus


Query: 383 acaacgacatcaaa 396
||||||||||||||
Sbjct: 6493 acaacgacatcaaa 6480


>AE006052 Pasteurella multocida subsp. multocida str. Pm70 section 19
of 204 of the complete genome.
Length = 10665

Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Minus


Query: 517 tattgtggagatct 530
||||||||||||||
Sbjct: 9417 tattgtggagatct 9404


>AE006042 Pasteurella multocida subsp. multocida str. Pm70 section 9
of 204 of the complete genome.
Length = 12736

Score = 28.2 bits (14), Expect = 6.7
Identities = 17/18 (94%)
Strand = Plus / Plus


Query: 109 ggtatttatgacggctat 126
||||||||||| ||||||
Sbjct: 8602 ggtatttatgaaggctat 8619


Database: pm
Posted date: Nov 3, 2009 2:10 PM
Number of letters in database: 2,269,587
Number of sequences in database: 204

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 204
Number of Hits to DB: 17,519
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 15
Length of query: 963
Length of database: 2,269,587
Length adjustment: 16
Effective length of query: 947
Effective length of database: 2,266,323
Effective search space: 2146207881
Effective search space used: 2146207881
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 14 (28.2 bits)
S2: 14 (28.2 bits)