Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.cmm.msu.ru/~lesiad/Term3/rna.fp Дата изменения: Sat Sep 20 16:33:28 2008 Дата индексирования: Tue Oct 2 06:24:19 2012 Кодировка:

rna.pdb
rna.out
2 # duplex
28 # number of base-pairs
1 1 # explicit bp numbering/hetero atoms
1 68 0 # 1 | B:.902_:[..G]G-----C[..C]:.971_:B 0.93 0.33 11.52 8.85 0.08
2 67 0 # 2 | B:.903_:[..G]G-----C[..C]:.970_:B 0.65 0.39 6.43 8.57 -0.07
3 66 0 # 3 | B:.904_:[..G]G-----C[..C]:.969_:B 0.45 0.05 13.87 8.68 -0.96
4 65 0 # 4 | B:.905_:[..G]G-----C[..C]:.968_:B 0.40 0.13 20.10 8.75 -0.83
5 64 0 # 5 | B:.906_:[..U]U-----A[..A]:.967_:B 0.50 0.09 18.15 8.54 -0.82
6 63 0 # 6 | B:.907_:[..A]A-----U[..U]:.966_:B 0.37 0.10 8.55 8.82 -0.93
46 62 0 # 7 | B:.949_:[..C]C-----G[..G]:.965_:B 0.83 0.18 18.42 8.62 -0.31
47 61 0 # 8 | B:.950_:[..G]G-----C[..C]:.964_:B 0.58 0.03 20.29 8.65 -0.85
48 60 0 # 9 | B:.951_:[..A]A-----U[..U]:.963_:B 0.50 0.16 18.93 8.42 -0.67
49 59 0 # 10 | B:.952_:[..G]G-----C[..C]:.962_:B 0.42 0.20 12.67 8.72 -0.67
50 58 0 # 11 | B:.953_:[..G]G-----C[..C]:.961_:B 0.31 0.03 15.31 8.95 -1.13
51 55 0 # 12 | B:.954_:[..U]U-*---A[..A]:.958_:B 5.81 1.43 19.52 7.01 8.67
52 16 9 # 13 x B:.955_:[..U]U-**+-G[..G]:.918_:B 5.97 0.45 17.16 7.86 6.87
35 31 0 # 14 | B:.937_:[..A]A-*---U[..U]:.933_:B 7.72 0.43 20.31 7.36 8.57
36 30 0 # 15 | B:.938_:[..U]U-*---U[..U]:.932_:B 3.87 0.41 11.41 8.95 4.69
37 29 0 # 16 | B:.939_:[..U]U-----A[..A]:.931_:B 0.59 0.58 17.75 8.57 0.25
38 28 0 # 17 | B:.940_:[..C]C-*---G[..G]:.930_:B 2.11 0.35 3.76 8.70 2.81
39 27 0 # 18 | B:.941_:[..C]C-----G[..G]:.929_:B 0.59 0.14 12.23 9.19 -0.62
40 26 0 # 19 | B:.942_:[..G]G-----C[..C]:.928_:B 0.65 0.38 9.52 8.53 -0.10
41 25 0 # 20 | B:.943_:[..G]G-----C[..C]:.927_:B 0.36 0.33 22.77 8.92 -0.47
42 24 0 # 21 | B:.944_:[..A]A-*---A[..A]:.926_:B 2.20 0.04 33.88 10.50 2.28
9 23 0 # 22 | B:.910_:[..G]G-----C[..C]:.925_:B 0.57 0.43 13.48 8.80 -0.07
10 22 0 # 23 | B:.911_:[..C]C-----G[..G]:.924_:B 0.51 0.00 15.01 8.82 -0.99
11 21 0 # 24 | B:.912_:[..C]C-----G[..G]:.923_:B 0.17 0.08 6.28 8.92 -1.17
12 44 0 # 25 | B:.913_:[..A]A-**+-G[..G]:.946_:B 5.33 0.46 8.49 10.94 6.25
13 19 0 # 26 | B:.914_:[..A]A-*---A[..A]:.921_:B 6.65 0.32 8.48 9.26 7.28
14 45 9 # 27 x B:.915_:[..G]G-**+-U[..U]:.948_:B 1.27 0.79 11.28 9.25 2.84
17 53 1 # 28 + B:.919_:[..G]G-----C[..C]:.956_:B 0.33 0.09 31.71 8.47 -0.98
##### Base-pair criteria used: 4.00 15.00 2.50 65.00 4.50 7.50
##### 9 non-Watson-Crick base-pairs, and 3 helices (1 isolated bp)
##### Helix #1 (13): 1 - 13 ***broken O3'[i] to P[i+1] linkage***
##### Helix #2 (14): 14 - 27 ***broken O3'[i] to P[i+1] linkage***
##### Helix #3 (1): 28