PF00070


Header 
Program needle  
Rundate Sun Mar 25 2007 18:44:12  
Align format srspair  
Report file temp_job1.needlep  
Results 
  #=======================================
#
# Aligned_sequences: 2
# 1: TRXB_ECOLI
# 2: TRXR1_HUMAN
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 106
# Identity:      24/106 (22.6%)
# Similarity:    44/106 (41.5%)
# Gaps:          13/106 (12.3%)
# Score: 44.5
# 
#
#=======================================

TRXB_ECOLI         1 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRR---DGFRAEKILIKRLMD     47
                      |..|:|....|:|.|.:|:.|..:|.::.|.   .||  ::.:..::.:
TRXR1_HUMAN        1 -KTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGF--DQDMANKIGE     47

TRXB_ECOLI        48 KVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVA     97
                     .:|...|.........:|...:.|..| |||....|.|.|.: :.|.:..
TRXR1_HUMAN       48 HMEEHGIKFIRQFVPIKVEQIEAGTPG-RLRVVAQSTNSEEI-IEGEYNT     95

TRXB_ECOLI        98 I-----     98
                     :     
TRXR1_HUMAN       96 VMLAIG    101





PF07992

Header 
Program needle  
Rundate Sun Mar 25 2007 18:54:32  
Align format srspair  
Report file temp_job2.needlep  
Results 
  #=======================================
#
# Aligned_sequences: 2
# 1: TRXB_ECOLI
# 2: TRXR1_HUMAN
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 343
# Identity:      78/343 (22.7%)
# Similarity:   134/343 (39.1%)
# Gaps:          73/343 (21.3%)
# Score: 153.0
# 
#
#=======================================

TRXB_ECOLI         1 SKLLILGSGPAGYTAAVYAARANLQPVLI---------TGMEKGGQLTTT     41
                      .|:|:|.|..|..||..||:...:.:::         |....||.....
TRXR1_HUMAN        1 -DLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNV     49

TRXB_ECOLI        42 TEVENWPGDPNDLTGPLLMERMH-----EHATKFE----TEIIFDHI---     79
                     ..:.........|.|..|.:..:     |...|.:    .|.:.:||   
TRXR1_HUMAN       50 GCIPKKLMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHIGSL     99

TRXB_ECOLI        80 ----------NKVDLQNR------PFRLNGDNGE-----YTCDALIIATG    108
                               .||..:|.      |.|:...|.:     |:.:..:||||
TRXR1_HUMAN      100 NWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATG    149

TRXB_ECOLI       109 ASARYLGLPSEEAFKGRGVSACATCDGFF---YRNQKVAVIGGGNTAVEE    155
                     ...||||:|.::.:       |.:.|..|   |...|..|:|....|:|.
TRXR1_HUMAN      150 ERPRYLGIPGDKEY-------CISSDDLFSLPYCPGKTLVVGASYVALEC    192

TRXB_ECOLI       156 ALYLSNIASEVHLIHRR---DGFRAEKILIKRLMDKVENGNIILHTNRTL    202
                     |.:|:.|..:|.::.|.   .||  ::.:..::.:.:|...|........
TRXR1_HUMAN      193 AGFLAGIGLDVTVMVRSILLRGF--DQDMANKIGEHMEEHGIKFIRQFVP    240

TRXB_ECOLI       203 EEVTGDQMGVTGVRLRDTQNSDNIESLDVAG----LFVAIGHSPNTAIFE    248
                     .:|...:.|..| |||....|.|.|.: :.|    :.:|||....|.   
TRXR1_HUMAN      241 IKVEQIEAGTPG-RLRVVAQSTNSEEI-IEGEYNTVMLAIGRDACTR---    285

TRXB_ECOLI       249 GQLELENGYIKVQSGIH----GNATQTSIPGVFAAGDVM-DHI    286
                      ::.||...:|:.....    .:..||::|.::|.||:: |.:
TRXR1_HUMAN      286 -KIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKV    327





PF00070


Header 
Program needle  
Rundate Sun Mar 25 2007 19:16:36  
Align format srspair  
Report file temp_job1.needlep  
Results 
  #=======================================
#
# Aligned_sequences: 2
# 1: TRXR1_HUMAN
# 2: TRXR2_HUMAN
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 101
# Identity:      53/101 (52.5%)
# Similarity:    72/101 (71.3%)
# Gaps:           3/101 ( 3.0%)
# Score: 259.0
# 
#
#=======================================

TRXR1_HUMAN        1 KTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHME     50
                     ||||||||||||||||||.|||||.|:|:|||.||||||.|::.:.|||.
TRXR2_HUMAN        1 KTLVVGASYVALECAGFLTGIGLDTTIMMRSIPLRGFDQQMSSMVIEHMA     50

TRXR1_HUMAN       51 EHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAI    100
                     .||.:|:|...|.:|.::   ..|:|:|..:.:.:.:...|.::||:.||
TRXR2_HUMAN       51 SHGTRFLRGCAPSRVRRL---PDGQLQVTWEDSTTGKEDTGTFDTVLWAI     97

TRXR1_HUMAN      101 G    101
                     |
TRXR2_HUMAN       98 G     98




PF07992




Header 
Program needle  
Rundate Sun Mar 25 2007 19:18:52  
Align format srspair  
Report file temp_job2.needlep  
Results 
  #=======================================
#
# Aligned_sequences: 2
# 1: TRXR1_HUMAN
# 2: TRXR2_HUMAN
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 328
# Identity:     184/328 (56.1%)
# Similarity:   234/328 (71.3%)
# Gaps:           4/328 ( 1.2%)
# Score: 937.0
# 
#
#=======================================

TRXR1_HUMAN        1 DLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVG     50
                     ||:::||||||||.||||||.|:||.|:|:|.|:|.||||||||||||||
TRXR2_HUMAN        1 DLLVVGGGSGGLACAKEAAQLGRKVAVVDYVEPSPQGTRWGLGGTCVNVG     50

TRXR1_HUMAN       51 CIPKKLMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLN    100
                     ||||||||||||||..:||:.||||:|.:.|.|||.:|.||||||:.|||
TRXR2_HUMAN       51 CIPKKLMHQAALLGGLIQDAPNYGWEVAQPVPHDWRKMAEAVQNHVKSLN    100

TRXR1_HUMAN      101 WGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGE    150
                     ||:||.|:::||.|.|....|:..|.:......|||.:.||:..:||||.
TRXR2_HUMAN      101 WGHRVQLQDRKVKYFNIKASFVDEHTVCGVAKGGKEILLSADHIIIATGG    150

TRXR1_HUMAN      151 RPRY-LGIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGI    199
                     |||| ..|.|..||.|:|||:|.|...||||||||||||||||||||.||
TRXR2_HUMAN      151 RPRYPTHIEGALEYGITSDDIFWLKESPGKTLVVGASYVALECAGFLTGI    200

TRXR1_HUMAN      200 GLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAG    249
                     |||.|:|:|||.||||||.|::.:.|||..||.:|:|...|.:|.::   
TRXR2_HUMAN      201 GLDTTIMMRSIPLRGFDQQMSSMVIEHMASHGTRFLRGCAPSRVRRL---    247

TRXR1_HUMAN      250 TPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEK    299
                     ..|:|:|..:.:.:.:...|.::||:.||||...||.:.||..||..:..
TRXR2_HUMAN      248 PDGQLQVTWEDSTTGKEDTGTFDTVLWAIGRVPDTRSLNLEKAGVDTSPD    297

TRXR1_HUMAN      300 TGKIPVTDEEQTNVPYIYAIGDILEDKV    327
                     |.||.|...|.|:||:||||||::|.:.
TRXR2_HUMAN      298 TQKILVDSREATSVPHIYAIGDVVEGRP    325

  


PF00070



Header 
Program needle  
Rundate Sun Mar 25 2007 19:30:17  
Align format srspair  
Report file temp_job1.needlep  
Results 
  #=======================================
#
# Aligned_sequences: 2
# 1: TRXB_ECOLI
# 2: TRXR2_HUMAN
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 107
# Identity:      21/107 (19.6%)
# Similarity:    37/107 (34.6%)
# Gaps:          18/107 (16.8%)
# Score: 31.5
# 
#
#=======================================

TRXB_ECOLI         1 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVE     50
                      |..|:|....|:|.|.:|:.|..:..::.|....|.    ..:.|..:.
TRXR2_HUMAN        1 -KTLVVGASYVALECAGFLTGIGLDTTIMMRSIPLRG----FDQQMSSMV     45

TRXB_ECOLI        51 NGNIILHTNRTLEEVTGDQMGVTGVRLRDTQN----SDNIESLDVAGLFV     96
                     ..::..|..|.|......::.    ||.|.|.    .|:....:..|.|.
TRXR2_HUMAN       46 IEHMASHGTRFLRGCAPSRVR----RLPDGQLQVTWEDSTTGKEDTGTFD     91

TRXB_ECOLI        97 AI-----     98
                     .:     
TRXR2_HUMAN       92 TVLWAIG     98




PF07992


Header 
Program needle  
Rundate Sun Mar 25 2007 19:33:03  
Align format srspair  
Report file temp_job2.needlep  
Results 
  #=======================================
#
# Aligned_sequences: 2
# 1: TRXB_ECOLI
# 2: TRXR2_HUMAN
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 351
# Identity:      75/351 (21.4%)
# Similarity:   123/351 (35.0%)
# Gaps:          91/351 (25.9%)
# Score: 115.0
# 
#
#=======================================

TRXB_ECOLI         1 SKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWP-G     49
                      .||::|.|..|...|..||:...:..::..:|...|.|      .|. |
TRXR2_HUMAN        1 -DLLVVGGGSGGLACAKEAAQLGRKVAVVDYVEPSPQGT------RWGLG     43

TRXB_ECOLI        50 DPNDLTGPLLMERMHE-----------------------HATKFETEIIF     76
                     ......|.:..:.||:                       |..:...|.:.
TRXR2_HUMAN       44 GTCVNVGCIPKKLMHQAALLGGLIQDAPNYGWEVAQPVPHDWRKMAEAVQ     93

TRXB_ECOLI        77 DHI------NKVDLQNRPFRL------------------NGDNGEYTCDA    102
                     :|:      ::|.||:|..:.                  .|.....:.|.
TRXR2_HUMAN       94 NHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVCGVAKGGKEILLSADH    143

TRXB_ECOLI       103 LIIATGASARYLGLPSE-EAFKGRGVSACATCDGFFYRNQ---KVAVIGG    148
                     :|||||...||   |:. |.....|:    |.|..|:..:   |..|:|.
TRXR2_HUMAN      144 IIIATGGRPRY---PTHIEGALEYGI----TSDDIFWLKESPGKTLVVGA    186

TRXB_ECOLI       149 GNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHT    198
                     ...|:|.|.:|:.|..:..::.|....|.    ..:.|..:...::..|.
TRXR2_HUMAN      187 SYVALECAGFLTGIGLDTTIMMRSIPLRG----FDQQMSSMVIEHMASHG    232

TRXB_ECOLI       199 NRTLEEVTGDQMGVTGVRLRDTQN----SDNIESLDVAGLF----VAIGH    240
                     .|.|......::.    ||.|.|.    .|:....:..|.|    .|||.
TRXR2_HUMAN      233 TRFLRGCAPSRVR----RLPDGQLQVTWEDSTTGKEDTGTFDTVLWAIGR    278

TRXB_ECOLI       241 SPNTAIFEGQLELENGYI----KVQSGIHGNATQTSIPGVFAAGDVMDHI    286
                     .|:|.    .|.||...:    ..|..:..:...||:|.::|.|||::..
TRXR2_HUMAN      279 VPDTR----SLNLEKAGVDTSPDTQKILVDSREATSVPHIYAIGDVVEGR    324

TRXB_ECOLI       286 -    286
                      
TRXR2_HUMAN      325 P    325