Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.cmm.msu.ru/~haaalbert/Term4/Align/ecoli_to_metja_2.water Дата изменения: Wed Mar 28 02:40:13 2007 Дата индексирования: Sat Dec 22 07:10:35 2007 Кодировка:

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# Program: water
# Rundate: Wed Mar 28 2007 02:42:03
# Commandline: water
# [-asequence] syd_ecoli_2.fasta
# [-bsequence] syd_metja_2.fasta
# [-outfile] ecoli_to_metja_2.water
# -auto
# Align_format: srspair
# Report_file: ecoli_to_metja_2.water
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: SYD_ECOLI
# 2: SYD_METJA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 441
# Identity: 114/441 (25.9%)
# Similarity: 172/441 (39.0%)
# Gaps: 136/441 (30.8%)
# Score: 344.5
#
#
#=======================================

SYD_ECOLI 3 EARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKA 52
:.||:.|:||||||::....|.|:::...||..:.:.||:::.||.|..:
SYD_METJA 3 DTRLENRFLDLRRPKVQAIFKIRSEMLKSVRNTLYNEGFIEVNTPKLVAS 52

SYD_ECOLI 53 TPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRD 102
..||..:....|...:..| |.|||||:||:||.:|.||.::|...||.
SYD_METJA 53 CTEGGTELFPISYFEREAF--LGQSPQLYKQMLMATGLDRVFEIAPIFRA 100

SYD_ECOLI 103 EDLRADRQ-PEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVDLGDF 151
|:....|. .|.|.||:|
SYD_METJA 101 EEHNTRRHLNEATSIDIE-------------------------------- 118

SYD_ECOLI 152 PVMTFAEAERRYGSDKPDLRNPMELTDVADLLKSVEFAVFAGPANDPKGR 201
|.||: || |..|:|:.|.:..|.....:.|..
SYD_METJA 119 --MAFAD-------DK----------DAMDILEKVVYNAFVDVYENRKKE 149

SYD_ECOLI 202 VAALRVPGGASLTRKQIDE--YGNFVKIYGAKGLAYIKVNERAKGLEGIN 249
:..|.:. ..|..::.|. |...:.|..|||: |.:.|
SYD_METJA 150 IETLGIE--FELPPEKFDRITYDEAIDIANAKGV------EISWG----- 186

SYD_ECOLI 250 SPVAKFLNAEIIEDILDRTAAQDGDMIFFGADNKKIVADAMGALRLKVGK 299
|| |.|.| :|.:.:.|..|..
SYD_METJA 187 ------------ED-LSREA-------------EKAIGEEMEGLYF---- 206

SYD_ECOLI 300 DLGLTDESKWAPLWVIDFPMFEDDGEGGLTAMHHPFTSPKDMTAAELKAA 349
:|| |..:...| :|.|.:..
SYD_METJA 207 ---ITD-------WPSEIRPF--------------YTMPDEKN------- 225

SYD_ECOLI 350 PENAVANAYDMVINGYEVGGGSVRIHNGDMQQTVFGILGINEEEQREKFG 399
|. :..|:|::....|:..|:.|||..|:........|:|. :.|.
SYD_METJA 226 PN--ICKAFDLMYKDLEISSGAQRIHLYDLLVENIKKKGLNP----DGFT 269

SYD_ECOLI 400 FLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPK 440
:.|:|.|||.|||||...|.||.||:||..:|||:.:.||:
SYD_METJA 270 YYLEAFKYGMPPHAGWGLGADRFTMVLTQQENIRECVLFPR 310


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