Global Alignment
Matrix Sequences Sequence Consisting of the first four Amino Acids in the Protein GYRB_ECOL:SNSY
Sequence Achieved by Substitution of the 2nd and 4th Amino Acid and Insertion between the 3d and 4th Amino Acid, in the Protein GYRB_ECOLI, to randomly chosen new amino acids:
TNFYV
Matrix Parameters
Match = 2Mismatch = -1
Deletion = -2
Global Alignment Scoring Matrix
Ill.1
Alignment Responding to the Optimal Trace
SNSY-TNFYV
Optimal Score
-1
Local Alignment
Matrix Sequences Sequence Consisting of the First Nine Amino Acids of the Protein GYRB_ECOLI:MSNSYDSSS
Sequence Consisting of 2nd, 3d, 7th, 8th and 9th Amino Acid Residues of the Protein GYRB_ECOLI:
SNSSS
Matrix Parameters
Match = 2Mismatch = -1
Deletion = -2
Local Alignment Scoring Matrix
Ill.2
Alignment Responding to the two Optimal Traces
MSNSYDSSSSNS
MSNSYDSSS
SSS
Optimal Score
6
SubOptimal Score
4
Score Responding tp Alignment with Gaps
3