Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.cmm.msu.ru/~danilenko/syh_aa_align.txt Дата изменения: Fri May 16 10:24:01 2008 Дата индексирования: Tue Oct 2 04:17:04 2012 Кодировка:

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# Program: needle
# Rundate: Fri 16 May 2008 10:34:05
# Commandline: needle
# -asequence syh_ecoli_aa.fasta
# -bsequence syh_pseab_aa.fasta
# -outfile syh_aa_align.txt
# Align_format: srspair
# Report_file: syh_aa_align.txt
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#=======================================
#
# Aligned_sequences: 2
# 1: SYH_ECOLI
# 2: SYH_PSEAB
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 430
# Identity: 263/430 (61.2%)
# Similarity: 322/430 (74.9%)
# Gaps: 7/430 ( 1.6%)
# Score: 1327.5
#
#
#=======================================

SYH_ECOLI 1 MAKNIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTP 50
|:|::||||||||.||.:|..|:.:|.|...:|..||||||||||:|.|.
SYH_PSEAB 1 MSKSLQAIRGMNDILPEQTPAWRYLERTFAGLLDGYGYSEIRLPILEFTE 50

SYH_ECOLI 51 LFKRAIGEVTDVVEKEMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLL-Y 99
||.|.|||.||||:||||||.||||:|||:|||||||||||.:||||. .
SYH_PSEAB 51 LFARGIGEGTDVVDKEMYTFLDRNGESLTMRPEGTAGCVRAVLEHGLSGG 100

SYH_ECOLI 100 NQEQRLWYIGPMFRHERPQKGRYRQFHQLGCEVFGLQGPDIDAELIMLTA 149
.|.|:|||.|||||:|:|||||||||||:|.|||.|.|||||||||:||.
SYH_PSEAB 101 GQVQKLWYTGPMFRYEKPQKGRYRQFHQIGVEVFNLPGPDIDAELIILTW 150

SYH_ECOLI 150 RWWRALGISEHVTLELNSIGSLEARANYRDALVAFLEQHKEKLDEDCKRR 199
|.|:.||:::.|||:||::||.||||.||:||||:|::..|:||||.:||
SYH_PSEAB 151 RLWQKLGMADAVTLQLNTLGSSEARARYREALVAYLQERFEQLDEDSQRR 200

SYH_ECOLI 200 MYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFAGLCKLLESAGI 249
|.|||||:||||....||||..||.|.|||||||..||.||...|::.|:
SYH_PSEAB 201 MTTNPLRILDSKVESTQALLVGAPTLHDYLDEESIAHFEGLKARLDAVGL 250

SYH_ECOLI 250 AYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRA 299
.|.:||:||||||||.||.|||||:.||:|||||.||||||||.|.||:.
SYH_PSEAB 251 RYEINQKLVRGLDYYCRTAFEWVTDKLGAQGTVCGGGRYDGLVSQFGGKP 300

SYH_ECOLI 300 TPAVGFAMGLERLVLLVQ--AVNPEFKADPVVDIYLVASGADTQSAAMAL 347
||.||||||:||||||:: .|.|.....| .|:|:.|.|...:.||:.|
SYH_PSEAB 301 TPGVGFAMGVERLVLLLETLGVIPAELNRP-ADLYVCAFGEPAELAALTL 349

SYH_ECOLI 348 AERLRDELPGVKLMTNHGGGNFKKQFARADKWGARVAVVLGESEVANGTA 397
||:||..:||::|:.|.|.|:||.||.:|||.|||.|::|||.||||...
SYH_PSEAB 350 AEQLRSAIPGIRLLVNAGAGSFKSQFKKADKSGARFALILGEDEVANRVV 399

SYH_ECOLI 398 VVKDLR-SGEQTAVAQDSVAAHLRTLLG-- 424
..|.|| .|||.::|.|::..||...|.
SYH_PSEAB 400 GFKPLRDEGEQQSIAWDALPEHLAACLAQA 429


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