Что такое филогенетическое дерево. Дополнения.

Результат выравнивания.

TreeTop.

Alignment
RS2_STRP1 MAVISMKQLLEAGVHFGHQTRRWNPKMAKYIFTERNGIHVIDLQQTVKLA
RS2_STRPN MAVISMKQLLEAGVHFGHQTRRWNPKMAKYIFTERNGIHVIDLQQTVKYA
RS2_CLOB1 MSVISMKQLLEAGVHFGHQTRRWNPKMAPYIFTERNGIYIIDLQKTVKKV
RS2_CLOTE MSVISMKQLLEAGVHFGHQTRRWNPKMAPYIFTERNGIYIIDLQKTVKKV
RS2_STAA1 MAVISMKQLLEAGVHFGHQTRRWNPKMKKYIFTERNGIYIIDLQKTVKKV
RS2_STAES MAVISMKQLLEAGVHFGHQTRRWNPKMKKYIFTERNGIYIIDLQKTVKKV
RS2_BACAN MSVISMKQLLEAGVHFGHQTRRWNPKMKRYIFTERNGIYIIDLQKTVKKV
RS2_LISMO MPVISMKQLLEAGVHFGHQTRRWNPKMKKYIFTERNGIYIIDLQKTVKKV

RS2_STRP1 DQAYEFVRDAAANDAVILFVGTKKQAAEAVADEATRAGQYFINHRWLGGT
RS2_STRPN DQAYDFMRDAAANDAVVLFVGTKKQAADAVAEEAVRSGQYFINHRWLGGT
RS2_CLOB1 EEAYNFLRSVAEEGKDVLFVGTKKQAQEAIEEEAKRSEMHFVNNRWLGGM
RS2_CLOTE EQAYNFIREVAAEGKDVIFVGTKKQAQEAIQEEAVRCDMHFVNNRWLGGM
RS2_STAA1 DEAYNFLKQVSEDGGQVLFVGTKKQAQESVKSEAERAGQFYINQRWLGGL
RS2_STAES EEAYNFVKQISEEGGKVLFVGTKKQAQESVKAEAERAGQFYVNQRWLGGI
RS2_BACAN EEAFKVMRDIAAEGGDILFVGTKKQAQEAIKEEATRAGMYFVNQRWLGGT
RS2_LISMO DEAFNFMREVASDNGTILFVGTKKQAQESVRDEAIRSGQYFVNHRWLGGT

RS2_STRP1 LTNWGTIQKRIARLKEIKRMEEEGTFDVLPKKEVALLNKQRARLEKFLGG
RS2_STRPN LTNWGTIQKRIARLKEIKRMEEDGTFEVLPKKEVALLNKQRARLEKFLGG
RS2_CLOB1 LTNFTTITARINKLEELDKMEEDGTFEVLPKKEVIKLKNEREKLEKNLGG
RS2_CLOTE LTNFSTIKGRIRTLEELEQMEQDGTFEVLPKKEVIKLKLEEEKLEKNLGG
RS2_STAA1 LTNYKTISKRIKRISEIEKMEEDGLFEVLPKKEVVELKKEYDRLIKFLGG
RS2_STAES LTNYKTISKRIKRISEIEKMEEDGLFEVLPKKEVVELKKEYDRLIKFLGG
RS2_BACAN LTNFQTIQKRIKRLKDIERMQEDGTFEVLPKKEVVQLKKELERLEKFLGG
RS2_LISMO LTNFETIQKRIQHLKKIERMEADGTFEVLPKKEVVLLKKEQEKLERFLGG

RS2_STRP1 IEDMPRIP-DVMYVVDPHKEQIAVKEAKKLGIPVVAMVDTNADPDDIDII
RS2_STRPN IEDMPRIP-DVMYVVDPHKEQIAVKEAKKLGIPVVAMVDTNTDPDDIDVI
RS2_CLOB1 IRKLDANNVGAMFIVDPRKEKNAILEAKRLGIPVVAIVDTNCDPDEVDFV
RS2_CLOTE IKNLNANNVGAMFVVDPRKEKNAISEAKILGIPVVAIVDTNCDPDEVDYV
RS2_STAA1 IRDMKSMP-QALFVVDPRKERNAIAEARKLNIPIVGIVDTNCDPDEIDYV
RS2_STAES IRDMKSMP-QALFVVDPRKERNAIAEARKLNIPIVGIVDTNCDPDEIDYV
RS2_BACAN IKDMKGLP-SALFVVDPRKERIAVAEARKLHIPIIGIVDTNCDPDEIDHV
RS2_LISMO IKDMKGLP-DALFIVDPRKERIAVAEARKLHIPIIGIVDTNCDPDEIDYV

RS2_STRP1 IPANDDAIRAVKLITAKLADAIIEGRQG---EDADVA----FEADTQADS
RS2_STRPN IPANDDAIRAVKLITAKLADAIIEGRQG---EDAVAVEAEFAALETQADS
RS2_CLOB1 IPGNDDAIRAVRLIAAKMADAVLEGRQG---EQLAE--------------
RS2_CLOTE IPGNDDAIRAVKLITAKMADAVIEGRQG---EQLAE--------------
RS2_STAA1 IPANDDAIRAVKLLTAKMADAILEGQQGVSNEEVAAEQNIDLDEKEKSEE
RS2_STAES IPANDDAIRAVKLLTGKMADAILEGQQGVSNEEVAAEQNINLDDKEESEQ
RS2_BACAN IPANDDAIRAVKLLTSKMADAILEAKQG---EETVTA-------------
RS2_LISMO IPANDDAIRAVKLLTAKMADAIIEVNQG---EELTEAEVAPVEEKATEET

RS2_STRP1 IEEIVEVVEGDNA
RS2_STRPN IEEIVEVVEGDNA
RS2_CLOB1 -------------
RS2_CLOTE -------------
RS2_STAA1 TEATEE-------
RS2_STAES AETTEENTSVESN
RS2_BACAN -------------
RS2_LISMO TEA----------





                    PHYLOGENETIC   TREE

 

                    CLUSTER ALGORITHM

 
0.369234
_________________________________________________________________ RS2_STRP1
|                                              |_________________ RS2_STRPN
|________________________________________________________________ RS2_CLOB1
         |                                  |____________________ RS2_CLOTE
         |_______________________________________________________ RS2_STAA1
                 |                             |_________________ RS2_STAES
                 |_______________________________________________ RS2_BACAN
                          |______________________________________ RS2_LISMO


* The phylogenetic tree in Phylip format (multiline)

((RS2_STRP1:0.096327,
RS2_STRPN:0.096327)
:0.272907,
((RS2_CLOB1:0.112069,
RS2_CLOTE:0.112069)
:0.204472,
((RS2_STAA1:0.093844,
RS2_STAES:0.093844)
:0.176237,
(RS2_BACAN:0.217232,
RS2_LISMO:0.217232)
:0.052849)
:0.046460)
:0.052693);

 

                   TOPOLOGICAL ALGORITHM

 
__________________________________ RS2_LISMO
|                    |______________ RS2_STAA1
|                    |             |________________________ RS2_STAES
|                    |______________ RS2_BACAN
|                          |______________ RS2_CLOB1
|                                       |_______________________ RS2_CLOTE
| RS2_STRPN
| RS2_STRP1


* The phylogenetic tree in Phylip format (multiline)

((((RS2_LISMO:0.084832,
(RS2_STAA1:0.001000,
RS2_STAES:0.177628)
:0.101019)
:0.002778,
(RS2_BACAN:0.061378,
(RS2_CLOB1:0.001000,
RS2_CLOTE:0.168995)
:0.098987)
:0.046063)
:0.154151,
RS2_STRPN:0.001000)
:0.000500,
RS2_STRP1:0.000500);


                       


    
Distance Matrix
               1     2     3     4     5     6     7     8     
 1 RS2_STRP1  0.000 0.096 0.398 0.390 0.356 0.352 0.340 0.318
 2 RS2_STRPN  0.096 0.000 0.404 0.397 0.351 0.349 0.354 0.309
 3 RS2_CLOB1  0.398 0.404 0.000 0.112 0.333 0.362 0.247 0.327
 4 RS2_CLOTE  0.390 0.397 0.112 0.000 0.342 0.369 0.239 0.313
 5 RS2_STAA1  0.356 0.351 0.333 0.342 0.000 0.094 0.273 0.231
 6 RS2_STAES  0.352 0.349 0.362 0.369 0.094 0.000 0.299 0.278
 7 RS2_BACAN  0.340 0.354 0.247 0.239 0.273 0.299 0.000 0.217
 8 RS2_LISMO  0.318 0.309 0.327 0.313 0.231 0.278 0.217 0.000