Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.cmm.msu.ru/~bennigsen/term3/rna.fp Дата изменения: Thu Sep 25 19:41:48 2008 Дата индексирования: Tue Oct 2 07:14:21 2012 Кодировка:

rna_old.pdb
rna_old.out
2 # duplex
28 # number of base-pairs
1 1 # explicit bp numbering/hetero atoms
1 70 0 # 1 | C:.501_:[..G]G-----C[..C]:.572_:C 0.41 0.23 17.12 8.90 -0.64
2 69 0 # 2 | C:.502_:[..G]G-*---U[..U]:.571_:C 2.54 0.67 13.01 8.81 3.89
3 68 0 # 3 | C:.503_:[..C]C-----G[..G]:.570_:C 0.40 0.32 15.00 8.95 -0.45
4 67 0 # 4 | C:.504_:[..C]C-----G[..G]:.569_:C 0.18 0.16 11.19 8.98 -1.00
5 66 0 # 5 | C:.505_:[..C]C-----G[..G]:.568_:C 0.28 0.21 4.39 9.02 -0.79
6 65 0 # 6 | C:.506_:[..C]C-----G[..G]:.567_:C 0.37 0.06 9.66 8.82 -1.01
7 64 0 # 7 | C:.507_:[..A]A-----U[..U]:.566_:C 0.64 0.03 5.29 9.06 -0.80
47 63 0 # 8 | C:.549_:[..G]G-----C[..C]:.565_:C 0.61 0.17 10.03 8.98 -0.55
48 62 0 # 9 | C:.550_:[..G]G-----C[..C]:.564_:C 0.38 0.33 11.45 8.97 -0.46
49 61 0 # 10 | C:.551_:[..G]G-----C[..C]:.563_:C 0.62 0.29 6.44 8.78 -0.31
50 60 0 # 11 | C:.552_:[..G]G-----C[..C]:.562_:C 0.45 0.28 5.95 8.83 -0.48
51 59 0 # 12 | C:.553_:[..G]G-----C[..C]:.561_:C 0.93 0.04 12.69 8.75 -0.49
52 56 0 # 13 | C:.554_:[..U]U-**--A[..A]:.558_:C 4.53 0.88 10.16 7.59 6.29
53 17 9 # 14 x C:.555_:[..U]U-**+-G[..G]:.518_:C 5.59 0.34 24.79 8.13 6.27
37 31 0 # 15 | C:.538_:[..A]A-*---C[..C]:.532_:C 5.03 1.35 16.20 9.45 7.73
38 30 0 # 16 | C:.539_:[..G]G-----C[..C]:.531_:C 0.44 0.17 15.96 8.85 -0.71
39 29 0 # 17 | C:.540_:[..G]G-----C[..C]:.530_:C 0.95 0.05 8.26 8.83 -0.46
40 28 0 # 18 | C:.541_:[..C]C-----G[..G]:.529_:C 0.38 0.10 10.46 8.67 -0.92
41 27 0 # 19 | C:.542_:[..C]C-----G[..G]:.528_:C 0.47 0.04 10.21 8.78 -0.94
42 26 0 # 20 | C:.543_:[..G]G-----C[..C]:.527_:C 0.17 0.00 29.02 8.84 -1.33
43 25 0 # 21 | C:.544_:[..A]A-*---G[..G]:.526_:C 1.56 0.05 29.75 10.70 1.67
10 24 0 # 22 | C:.510_:[..G]G-----C[..C]:.525_:C 0.35 0.11 4.39 8.90 -0.92
11 23 0 # 23 | C:.511_:[..U]U-----A[..A]:.524_:C 0.32 0.11 9.43 8.67 -0.96
12 22 0 # 24 | C:.512_:[..C]C-----G[..G]:.523_:C 0.29 0.00 6.53 8.92 -1.20
13 21 0 # 25 | C:.513_:[..U]U-*---G[..G]:.522_:C 2.41 0.26 9.20 8.77 2.93
14 8 0 # 26 | C:.514_:[..A]A-**--U[..U]:.508_:C 4.66 1.00 26.67 7.11 6.65
15 46 9 # 27 x C:.515_:[..G]G-**+-C[..C]:.548_:C 3.69 0.30 7.08 9.08 4.29
18 54 1 # 28 + C:.519_:[..G]G-----C[..C]:.556_:C 0.26 0.25 43.94 8.83 -0.73
##### Base-pair criteria used: 4.00 15.00 2.50 65.00 4.50 7.50
##### 8 non-Watson-Crick base-pairs, and 3 helices (1 isolated bp)
##### Helix #1 (14): 1 - 14 ***broken O3'[i] to P[i+1] linkage***
##### Helix #2 (13): 15 - 27 ***broken O3'[i] to P[i+1] linkage***
##### Helix #3 (1): 28