Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.cmm.msu.ru/~alisikfox90/term3/rna.fp Дата изменения: Fri Oct 3 19:52:35 2008 Дата индексирования: Tue Oct 2 08:09:35 2012 Кодировка:

rna_old.pdb
rna_old.out
2 # duplex
57 # number of base-pairs
1 1 # explicit bp numbering/hetero atoms
2 72 0 # 1 | C:...2_:[..G]G-----C[..C]:..71_:C 0.60 0.54 11.00 8.94 0.18
3 71 0 # 2 | C:...3_:[..C]C-----G[..G]:..70_:C 1.20 0.99 20.10 8.93 1.68
4 70 0 # 3 | C:...4_:[..G]G-----C[..C]:..69_:C 0.56 0.54 10.64 8.84 0.15
5 69 0 # 4 | C:...5_:[..G]G-----C[..C]:..68_:C 0.78 0.53 11.85 9.08 0.33
6 68 0 # 5 | C:...6_:[..G]G-----C[..C]:..67_:C 0.45 0.36 16.66 8.98 -0.33
7 67 0 # 6 | C:...7_:[..G]G-----C[..C]:..66_:C 1.07 0.53 14.66 9.47 0.62
50 66 0 # 7 | C:..49_:[..G]G-----C[..C]:..65_:C 0.59 0.28 6.44 9.22 -0.34
51 65 0 # 8 | C:..50_:[..U]U-*---G[..G]:..64_:C 2.14 0.85 7.95 8.73 3.83
52 64 0 # 9 | C:..51_:[..C]C-----G[..G]:..63_:C 0.55 0.40 6.57 8.81 -0.14
53 63 0 # 10 | C:..52_:[..G]G-----C[..C]:..62_:C 0.50 0.21 7.06 9.38 -0.58
54 62 0 # 11 | C:..53_:[..G]G-----C[..C]:..61_:C 0.37 0.24 1.67 9.31 -0.66
55 59 0 # 12 | C:..54_:[5MU]u-**--A[..A]:..58_:C 3.69 0.47 12.38 7.65 4.63
56 19 9 # 13 x C:..55_:[PSU]P-**+-G[..G]:..18_:C 6.55 1.33 37.42 9.14 9.21
36 34 0 # 14 | C:..35_:[..A]A-*---U[..U]:..33_:C 8.81 0.78 45.07 5.78 10.38
39 33 0 # 15 | C:..38_:[..A]A-*---c[OMC]:..32_:C 1.33 0.56 26.40 9.70 2.45
40 32 0 # 16 | C:..39_:[..C]C-----G[..G]:..31_:C 0.57 0.15 20.22 8.60 -0.63
41 31 0 # 17 | C:..40_:[..C]C-----G[..G]:..30_:C 0.78 0.40 11.85 8.89 0.07
42 30 0 # 18 | C:..41_:[..C]C-----G[..G]:..29_:C 0.41 0.35 8.13 9.07 -0.40
43 29 0 # 19 | C:..42_:[..G]G-----C[..C]:..28_:C 0.96 0.87 26.06 8.92 1.19
44 28 0 # 20 | C:..43_:[..A]A-----U[..U]:..27_:C 0.36 0.22 21.12 8.83 -0.69
45 27 0 # 21 | C:..44_:[..A]A-*---G[..G]:..26_:C 1.54 0.10 20.52 10.79 1.74
10 26 0 # 22 | C:..10_:[..G]G-----C[..C]:..25_:C 0.89 0.27 2.35 8.95 -0.08
11 25 0 # 23 | C:..11_:[..A]A-----U[..U]:..24_:C 0.64 0.48 5.68 8.76 0.10
12 24 0 # 24 | C:..12_:[..G]G-----C[..C]:..23_:C 0.39 0.19 12.82 8.85 -0.72
13 23 0 # 25 | C:..13_:[..C]C-----G[..G]:..22_:C 1.29 0.34 9.98 8.73 0.48
14 8 0 # 26 | C:..14_:[..A]A-**--u[4SU]:...8_:C 4.43 0.29 19.08 7.43 5.01
15 49 9 # 27 x C:..15_:[..G]G-**+-C[..C]:..48_:C 2.87 0.15 5.36 8.89 3.16
20 57 1 # 28 + C:..19_:[..G]G-----C[..C]:..56_:C 1.28 0.50 50.18 9.35 0.78
79 149 0 # 29 | D:...2_:[..G]G-----C[..C]:..71_:D 0.59 0.46 17.25 8.69 0.01
80 148 0 # 30 | D:...3_:[..C]C-----G[..G]:..70_:D 0.92 0.84 20.02 8.95 1.10
81 147 0 # 31 | D:...4_:[..G]G-----C[..C]:..69_:D 0.76 0.52 9.13 8.96 0.30
82 146 0 # 32 | D:...5_:[..G]G-----C[..C]:..68_:D 0.61 0.42 11.00 9.10 -0.06
83 145 0 # 33 | D:...6_:[..G]G-----C[..C]:..67_:D 0.43 0.34 9.20 9.03 -0.39
84 144 0 # 34 | D:...7_:[..G]G-----C[..C]:..66_:D 1.11 0.56 15.44 9.34 0.73
127 143 0 # 35 | D:..49_:[..G]G-----C[..C]:..65_:D 1.15 0.40 10.70 9.27 0.46
128 142 0 # 36 | D:..50_:[..U]U-*---G[..G]:..64_:D 2.14 0.59 2.72 8.69 3.31
129 141 0 # 37 | D:..51_:[..C]C-----G[..G]:..63_:D 0.89 0.57 2.17 9.06 0.54
130 140 0 # 38 | D:..52_:[..G]G-----C[..C]:..62_:D 0.45 0.13 10.47 9.41 -0.80
131 139 0 # 39 | D:..53_:[..G]G-----C[..C]:..61_:D 0.51 0.27 6.73 9.58 -0.46
132 136 0 # 40 | D:..54_:[5MU]u-**--A[..A]:..58_:D 3.54 0.19 15.32 7.86 3.92
133 96 9 # 41 x D:..55_:[PSU]P-**+-G[..G]:..18_:D 7.11 0.05 37.58 9.13 7.21
113 111 0 # 42 | D:..35_:[..A]A-*---U[..U]:..33_:D 9.54 1.57 36.09 5.63 12.69
116 110 0 # 43 | D:..38_:[..A]A-*---c[OMC]:..32_:D 1.20 0.23 26.93 9.78 1.66
117 109 0 # 44 | D:..39_:[..C]C-----G[..G]:..31_:D 0.72 0.69 20.42 8.91 0.61
118 108 0 # 45 | D:..40_:[..C]C-----G[..G]:..30_:D 0.69 0.11 6.72 8.92 -0.59
119 107 0 # 46 | D:..41_:[..C]C-----G[..G]:..29_:D 0.16 0.12 11.01 8.93 -1.10
120 106 0 # 47 | D:..42_:[..G]G-----C[..C]:..28_:D 0.70 0.68 22.90 8.96 0.56
121 105 0 # 48 | D:..43_:[..A]A-----U[..U]:..27_:D 0.59 0.54 20.83 8.87 0.17
122 104 0 # 49 | D:..44_:[..A]A-*---G[..G]:..26_:D 1.51 0.46 25.69 10.69 2.43
87 103 0 # 50 | D:..10_:[..G]G-----C[..C]:..25_:D 0.82 0.42 7.49 8.97 0.15
88 102 0 # 51 | D:..11_:[..A]A-----U[..U]:..24_:D 0.30 0.11 2.48 8.69 -0.98
89 101 0 # 52 | D:..12_:[..G]G-----C[..C]:..23_:D 0.31 0.07 8.06 8.86 -1.05
90 100 0 # 53 | D:..13_:[..C]C-----G[..G]:..22_:D 1.56 0.40 10.45 8.75 0.87
91 85 0 # 54 | D:..14_:[..A]A-**--u[4SU]:...8_:D 4.50 1.10 25.72 7.47 6.70
92 126 0 # 55 | D:..15_:[..G]G-**+-C[..C]:..48_:D 2.76 0.40 7.55 8.99 3.55
93 137 9 # 56 x D:..16_:[..C]C-**+-A[..A]:..59_:D 7.77 1.81 58.99 6.97 11.38
97 134 1 # 57 + D:..19_:[..G]G-----C[..C]:..56_:D 1.38 0.37 55.03 9.47 0.61
##### Base-pair criteria used: 4.00 15.00 2.50 65.00 4.50 7.50
##### 17 non-Watson-Crick base-pairs, and 6 helices (2 isolated bps)
##### Helix #1 (13): 1 - 13 ***broken O3'[i] to P[i+1] linkage***
##### Helix #2 (14): 14 - 27 ***broken O3'[i] to P[i+1] linkage***
##### Helix #3 (1): 28
##### Helix #4 (13): 29 - 41 ***broken O3'[i] to P[i+1] linkage***
##### Helix #5 (15): 42 - 56 ***broken O3'[i] to P[i+1] linkage***
##### Helix #6 (1): 57