Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.cmm.msu.ru/~alex2308/viravnivanie/match.matcher Дата изменения: Sun Mar 29 23:33:38 2009 Дата индексирования: Tue Oct 2 14:48:41 2012 Кодировка:

########################################
# Program: matcher
# Rundate: Mon 30 Mar 2009 00:55:16
# Commandline: matcher
# [-asequence] dps_ecoli.fasta
# [-bsequence] dps_mycs2.fasta
# [-outfile] match.matcher
# -alternatives 5
# Align_format: markx0
# Report_file: match.matcher
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: DPS_ECOLI
# 2: DPS_MYCS2
# Matrix: EBLOSUM62
# Gap_penalty: 14
# Extend_penalty: 4
#
# Length: 154
# Identity: 54/154 (35.1%)
# Similarity: 80/154 (51.9%)
# Gaps: 2/154 ( 1.3%)
# Score: 217
#
#
#=======================================

20 30 40 50 60
DPS_EC YTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEM
.: .:: . .:: .:. . :: : : :::. : ::: ::::
DPS_MY FTIPGLSDKKASDVADLLQKQLSTYNDLHLTLKHVHWNVVGPNFIGVHEM
10 20 30 40 50

70 80 90 100 110
DPS_EC LDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQ
.: . . : .::: :: :: : : .. ::
DPS_MY IDPQVELVRGYADEVAERIATLGKSPKGTPGAIIKDRTWDDYSVERDTVQ
60 70 80 90 100

120 130 140 150 160
DPS_EC DHLKELADRYAIVANDVRKAIGEAKDDD--TADILTAASRDLDKFLWFIE
:: : : : : ::.: . .: : . :.: : . .:.:: ::.
DPS_MY AHLAALDLVYNGVIEDTRKSIEKLEDLDLVSQDLLIAHAGELEKFQWFVR
110 120 130 140 150


DPS_EC SNIE
...:
DPS_MY AHLE



#=======================================
#
# Aligned_sequences: 2
# 1: DPS_ECOLI
# 2: DPS_MYCS2
# Matrix: EBLOSUM62
# Gap_penalty: 14
# Extend_penalty: 4
#
# Length: 33
# Identity: 9/33 (27.3%)
# Similarity: 15/33 (45.5%)
# Gaps: 0/33 ( 0.0%)
# Score: 31
#
#
#=======================================

120 130 140
DPS_EC VQDHLKELADRYAIVANDVRKAIGEAKDDDTAD
:. . :.:.: : . . : : : :
DPS_MY VRGYADEVAERIATLGKSPKGTPGAIIKDRTWD
70 80 90


#=======================================
#
# Aligned_sequences: 2
# 1: DPS_ECOLI
# 2: DPS_MYCS2
# Matrix: EBLOSUM62
# Gap_penalty: 14
# Extend_penalty: 4
#
# Length: 13
# Identity: 5/13 (38.5%)
# Similarity: 8/13 (61.5%)
# Gaps: 0/13 ( 0.0%)
# Score: 28
#
#
#=======================================

140
DPS_EC IGEAKDDDTADIL
. . : : ::.:
DPS_MY LSDKKASDVADLL
10 20


#=======================================
#
# Aligned_sequences: 2
# 1: DPS_ECOLI
# 2: DPS_MYCS2
# Matrix: EBLOSUM62
# Gap_penalty: 14
# Extend_penalty: 4
#
# Length: 18
# Identity: 6/18 (33.3%)
# Similarity: 9/18 (50.0%)
# Gaps: 0/18 ( 0.0%)
# Score: 26
#
#
#=======================================

110 120
DPS_EC LDIHNVQDHLKELADRYA
. .: . : :: ::
DPS_MY IGVHEMIDPQVELVRGYA
50 60


#=======================================
#
# Aligned_sequences: 2
# 1: DPS_ECOLI
# 2: DPS_MYCS2
# Matrix: EBLOSUM62
# Gap_penalty: 14
# Extend_penalty: 4
#
# Length: 19
# Identity: 4/19 (21.1%)
# Similarity: 11/19 (57.9%)
# Gaps: 0/19 ( 0.0%)
# Score: 22
#
#
#=======================================

30 40
DPS_EC VELLNRQVIQFIDLSLITK
.: . . . :: :...
DPS_MY IEDTRKSIEKLEDLDLVSQ
120 130


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