Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.cmm.msu.ru/~zamaraev/files/out.txt Дата изменения: Sat Oct 31 13:54:42 2009 Дата индексирования: Tue Oct 2 07:16:23 2012 Кодировка:

TBLASTN 2.2.21 [Jun-14-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= sp|P0AAI3|FTSH_ECOLI Cell division protease ftsH OS=Escherichia
coli (strain K12) GN=hflB PE=1 SV=1
(644 letters)

Database: pm
204 sequences; 2,269,587 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

AE006080 Pasteurella multocida subsp. multocida str. Pm70 sectio... 915 0.0
AE006212 Pasteurella multocida subsp. multocida str. Pm70 sectio... 48 2e-06
AE006234 Pasteurella multocida subsp. multocida str. Pm70 sectio... 45 1e-05

>AE006080 Pasteurella multocida subsp. multocida str. Pm70 section 47
of 204 of the complete genome.
Length = 13546

Score = 915 bits (2366), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/628 (71%), Positives = 520/628 (82%), Gaps = 2/628 (0%)
Frame = +2

Query: 1 MAKNLILWLVIAVVLMSVFQSFGPSESNGRKVDYSTFLQEVNNDQVREARINGREINVTK 60
M KNL+LW+V+AVV+M+ +Q F S S+G DY+TF+ ++ NDQ+R+AR + EI VTK
Sbjct: 839 MVKNLVLWIVVAVVMMTAYQGFN-SSSSGNTTDYTTFITDLGNDQIRQARFDYNEIFVTK 1015

Query: 61 KDSNRYTTYIPVQDPKLLDNLLTKNVKVVGEPPEEPSLLASIFISWFPMLLLIGVWIXXX 120
D ++YTT +P+ D KLL++LL K VKV G PE+ L + I ISWFPMLLLIGVW
Sbjct: 1016 TDGSKYTTVMPLNDDKLLNDLLNKKVKVEGTLPEKRGLFSQILISWFPMLLLIGVWFFFM 1195

Query: 121 XXXXXXXXXXXXXXXXXXXRMLTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKL 180
RM+T++QIKTTFADVAGCDEAKEEV E+V++LR+P +FQKL
Sbjct: 1196 RQMQGGGSKAMSFGKSRA-RMMTQEQIKTTFADVAGCDEAKEEVGEIVDFLRDPGKFQKL 1372

Query: 181 GGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQA 240
GGKIPKG+LMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQA
Sbjct: 1373 GGKIPKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQA 1552

Query: 241 KKAAPCIIFIDEIDAVXXXXXXXXXXXHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRP 300
KK APC+IFIDEIDAV HDEREQTLNQMLVEMDGFEGNEG+IVIAATNRP
Sbjct: 1553 KKNAPCLIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGVIVIAATNRP 1732

Query: 301 DVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPXXXXXXXXRGTPGFSGAD 360
DVLDPAL RPGRFDRQVVVGLPDVRGREQILKVHMRRVP+AP RGTPG+SGAD
Sbjct: 1733 DVLDPALTRPGRFDRQVVVGLPDVRGREQILKVHMRRVPIAPDVDAMTLARGTPGYSGAD 1912

Query: 361 LANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAERRSMVMTEAQKESTAYHEAGHAI 420
LANLVNEAALFAAR NKR+V+M+EFEKAKDKI MG ERR+M+MTE QKESTAYHEAGHAI
Sbjct: 1913 LANLVNEAALFAARTNKRLVTMLEFEKAKDKINMGPERRTMIMTEKQKESTAYHEAGHAI 2092

Query: 421 IGRLVPEHDPVHKVTIIPRGRALGVTFFLPEGDAISASRQKLESQISTLYGGRLAEEIIY 480
+G LVPEHDPVHKVTIIPRGRALGVTFFLPEGD +S S+++LES++STLY GRLAE++IY
Sbjct: 2093 VGYLVPEHDPVHKVTIIPRGRALGVTFFLPEGDQVSISQKQLESKLSTLYAGRLAEDLIY 2272

Query: 481 GPEHVSTGASNDIKVATNLARNMVTQWGFSEKLGPLLYAEEEGEVFLGRSVAKAKHMSDE 540
G E++STGASNDIKVATN+ARNMVTQWGFSEKLGP+LY+E++GEVFLGRS+AKAKHMSDE
Sbjct: 2273 GEENISTGASNDIKVATNIARNMVTQWGFSEKLGPILYSEDDGEVFLGRSMAKAKHMSDE 2452

Query: 541 TARIIDQEVKALIERNYNRARQLLTDNMDILHAMKDALMKYETIDAPQIDDLMARRDVRP 600
TA +ID+EV+ ++ RNY RARQ+L DNMDILHAMKDAL+KYETI+ QI+ LM R+ V P
Sbjct: 2453 TAHLIDEEVRTIVTRNYERARQILIDNMDILHAMKDALVKYETIEEEQIEQLMKRQPVTP 2632

Query: 601 PAGWE--EPGASNNSGDNGSPKAPRPVD 626
P+GW+ EP NN+G SP+ V+
Sbjct: 2633 PSGWDENEPTTQNNAGTKASPEPKSAVE 2716


>AE006212 Pasteurella multocida subsp. multocida str. Pm70 section 179
of 204 of the complete genome.
Length = 13738

Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Frame = -3

Query: 171 LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVG 229
L+EP R + PK +LM+GP G GKT +A+ +A A PF + + F E+ +VG
Sbjct: 4307 LQEPLRHEV----TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 4140

Query: 230 A-SRVRDMFEQAKK 242
S +RD+ + A K
Sbjct: 4139 VDSIIRDLTDSAMK 4098


>AE006234 Pasteurella multocida subsp. multocida str. Pm70 section 201
of 204 of the complete genome.
Length = 14505

Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 62/127 (48%), Gaps = 10/127 (7%)
Frame = +1

Query: 140 RMLTEDQIKTTFAD-VAGCDEAKE--EVAELVEYLREPSRFQKLGGKIPKG-VLMVGPPG 195
++ T +I+ D V G D AK+ VA Y R S Q ++ K +L++GP G
Sbjct: 2371 KLPTPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRSDKQITDVELGKSNILLIGPTG 2550

Query: 196 TGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQA-----KKAAPCIIF 249
+GKTLLA+ +A VPF + E +VG V Q+ ++A II+
Sbjct: 2551 SGKTLLAETMARMLNVPFAMADATTLTEAGYVGEDVENVLQKLVQSCDYDVERAEQGIIY 2730

Query: 250 IDEIDAV 256
IDEID +
Sbjct: 2731 IDEIDKI 2751


Database: pm
Posted date: Oct 31, 2009 11:53 AM
Number of letters in database: 2,269,587
Number of sequences in database: 204

Lambda K H
0.317 0.135 0.388

Gapped
Lambda K H
0.267 0.0410 0.140


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 204
Number of Hits to DB: 1,107,704
Number of extensions: 12315
Number of successful extensions: 72
Number of sequences better than 1.0e-03: 3
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 3
Length of query: 644
Length of database: 756,529
Length adjustment: 88
Effective length of query: 556
Effective length of database: 738,577
Effective search space: 410648812
Effective search space used: 410648812
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)