Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.cmm.msu.ru/~xenia_l/tblastn.out Дата изменения: Sat Oct 31 16:53:05 2009 Дата индексирования: Tue Oct 2 00:27:33 2012 Кодировка:

TBLASTN 2.2.21 [Jun-14-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= PSTS_ECOLI phosphate transporter subunit
(346 letters)

Database: xc
460 sequences; 5,103,728 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

AE012254 AE008922 Xanthomonas campestris pv. campestris str. ATC... 352 4e-98

>AE012254 AE008922 Xanthomonas campestris pv. campestris str. ATCC
33913, section 162 of 460 of the complete genome.
Length = 11586

Score = 352 bits (903), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 172/307 (56%), Positives = 220/307 (71%), Gaps = 2/307 (0%)
Frame = -2

Query: 29 LTGAGATFPAPVYAKWADTYQKETGNKVNYQGIGSSGGVKQIIANTVDFGASDAPLSDEK 88
+TGAGA+F PV +KW+ Y T +VNYQ IGS GG+ QI A +VDFG+SDAPL E+
Sbjct: 2297 VTGAGASFIYPVMSKWSADYNTATKKQVNYQSIGSGGGIAQIKAASVDFGSSDAPLKPEE 2118

Query: 89 LAQEGLFQFPTVIGGVVLAVNIPGLKSGELVLDGKTLGDIYLGKIKKWDDEAIAKLNPGL 148
LA GL QFP+VIGGVV +N+PG+ +G + LDGKTLGDI+LGK+ W+D AI LNPG+
Sbjct: 2117 LAAAGLAQFPSVIGGVVPVINVPGIAAGAVKLDGKTLGDIFLGKVTTWNDAAIVALNPGV 1938

Query: 149 KLPSQNIAVVRRADGSGTSFVFTSYLAKVNEEWKNNVGTGSTVKWPIGLGGKGNDGIAAF 208
KLP I VV R+DGSGTSF FT+YL+KVN +WK+ VG G+ V+WP G+GGKGN+G+AA+
Sbjct: 1937 KLPDSKITVVHRSDGSGTSFNFTNYLSKVNPDWKSKVGEGTAVQWPTGIGGKGNEGVAAY 1758

Query: 209 VQRLPGAIGYVEYAYAKQNNLAYTKLISADGKPVSPTEENFANAAKGADW--SKTFAQDL 266
V+++ G IGYVE +YA QN +AYT + +A GK V P++E FA AA ADW SK F +
Sbjct: 1757 VKQIKGGIGYVELSYALQNKMAYTAMKNAAGKFVQPSDETFAAAANSADWGSSKDFYLVM 1578

Query: 267 TNQKGEDAWPITSTTFILIHKDQKKPEQGTEVLKFFDWAYKTGAKQANDLDYASLPDSVV 326
TN G++AWPIT+T FIL+ K K P L+FF W Y G QA LDY LPD++V
Sbjct: 1577 TNAAGDNAWPITATNFILVQKKPKNPAGLKNTLEFFRWVYSKGDAQAKALDYVPLPDTLV 1398

Query: 327 EQVRAAW 333
Q+ A W
Sbjct: 1397 SQIEAYW 1377



Score = 311 bits (798), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 162/314 (51%), Positives = 214/314 (68%), Gaps = 2/314 (0%)
Frame = -2

Query: 27 ASLTGAGATFPAPVYAKWADTYQKETGNKVNYQGIGSSGGVKQIIANTVDFGASDAPLSD 86
A + GAGA+F P+ +KW+ Y TGNKVNYQ IGS GG+ QI A TVDFG+SD PL
Sbjct: 1031 AEIAGAGASFIYPLVSKWSADYNAATGNKVNYQSIGSGGGIAQIKAGTVDFGSSDKPLDS 852

Query: 87 EKLAQEGLFQFPTVIGGVVLAVNIPGLKSGELVLDGKTLGDIYLGKIKKWDDEAIAKLNP 146
+L Q GL QFP+ IGGVV VNI G+ G+L L G LGDI+LGK+ W+D AIA NP
Sbjct: 851 AELQQAGLGQFPSAIGGVVPVVNIEGMAPGKLRLTGALLGDIFLGKVTMWNDAAIAAANP 672

Query: 147 GLKLPSQNIAVVRRADGSGTSFVFTSYLAKVNEEWKNNVGTGSTVKWPIGLGGKGNDGIA 206
G+ LP+ I +V R+DGSGT+F F++YL+KV+ EWK VG G++V+WP G+GGKGN+G+A
Sbjct: 671 GVTLPATKINLVHRSDGSGTTFNFSNYLSKVSPEWKTKVGEGTSVQWPGGVGGKGNEGVA 492

Query: 207 AFVQRLPGAIGYVEYAYAKQNNLAYTKLISADGKPVSPTEENFANAAKGADWS--KTFAQ 264
++VQ++ G+IGYVE AYA QN + Y + +A G+ V P E+F AA ADW+ K F
Sbjct: 491 SYVQQIKGSIGYVELAYALQNKMPYASMQNAAGQWVEPNAESFGAAAASADWTNAKDFNL 312

Query: 265 DLTNQKGEDAWPITSTTFILIHKDQKKPEQGTEVLKFFDWAYKTGAKQANDLDYASLPDS 324
+TN GE AWPIT+T F+L+HK K + L FF WA + G QA++L Y LP
Sbjct: 311 VITNAPGEKAWPITATNFMLMHKQPKDAARSKATLDFFKWALENGQAQASELHYVPLPPE 132

Query: 325 VVEQVRAAWKTNIK 338
+V+Q+ A W + K
Sbjct: 131 LVKQIEAYWGSEFK 90


Database: xc
Posted date: Oct 31, 2009 4:13 PM
Number of letters in database: 5,103,728
Number of sequences in database: 460

Lambda K H
0.313 0.132 0.388

Gapped
Lambda K H
0.267 0.0410 0.140


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 460
Number of Hits to DB: 2,128,876
Number of extensions: 30116
Number of successful extensions: 131
Number of sequences better than 1.0e-03: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 2
Length of query: 346
Length of database: 1,701,242
Length adjustment: 88
Effective length of query: 258
Effective length of database: 1,660,762
Effective search space: 428476596
Effective search space used: 428476596
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 46 (22.3 bits)