Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.cmm.msu.ru/~xenia_l/domain.needle Дата изменения: Wed Apr 14 21:37:33 2010 Дата индексирования: Tue Oct 2 01:29:43 2012 Кодировка:

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# Program: needle
# Rundate: Wed 14 Apr 2010 21:37:33
# Commandline: needle
# -asequence domain1.fasta
# -bsequence domain2.fasta
# Align_format: srspair
# Report_file: domain.needle
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#=======================================
#
# Aligned_sequences: 2
# 1: NADM_ARCFU(domain)
# 2: NMNA1_HUMAN(domain)
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 294
# Identity: 39/294 (13.3%)
# Similarity: 71/294 (24.1%)
# Gaps: 135/294 (45.9%)
# Score: 36.0
#
#
#=======================================

NADM_ARCFU(do 1 ------------------------MRAFFVGRFQPYHLGHHEVVKNVLQK 26
:|.|.:.:......|.:.|||.::..
NMNA1_HUMAN(d 1 MENSEKTEVVLLACGSFNPITNMHLRLFELAKDYMNGTGRYTVVKGIISP 50

NADM_ARCFU(do 27 VDELIIGIGSAQESHSLENPFTAGERVLMIDRAVDEIK------------ 64
| |.|.:...| ..|..||:|.:.|....|
NMNA1_HUMAN(d 51 V-------GDAYKKKGL---IPAYHRVIMAELATKNSKWVEVDTWESLQK 90

NADM_ARCFU(do 65 ----------------------------------------------RELG 68
::..
NMNA1_HUMAN(d 91 EWKETLKVLRHHQEKLEASDCDHQQNSPTLERPGRKRKWTETQDSSQKKS 140

NADM_ARCFU(do 69 IDKKVYIIP----------LEDIYRNSLWVAH-VCSMVPPFDVVYTN--- 104
::.|...:| ||.....:||.:. :..:|..:.::...
NMNA1_HUMAN(d 141 LEPKTKAVPKVKLLCGADLLESFAVPNLWKSEDITQIVANYGLICVTRAG 190

NADM_ARCFU(do 105 ---NPLVYR---LFKEAGFKVMHTKMYNRNEYHGTEIRRKMLEGEDWEKY 148
...:|. |:|... .:.....:..|:...|:|||.:..|:.....
NMNA1_HUMAN(d 191 NDAQKFIYESDVLWKHRS-NIHVVNEWIANDISSTKIRRALRRGQSIRYL 239

NADM_ARCFU(do 149 VPESVAEIIKEIDGIKRLRDISGRDF------------------ 174
||:.|.|.|:: ..|......|.
NMNA1_HUMAN(d 240 VPDLVQEYIEK----HNLYSSESEDRNAGVILAPLQRNTAEAKT 279


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