Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.cmm.msu.ru/~vlada/term3/result11.txt Дата изменения: Tue Nov 14 15:17:08 2006 Дата индексирования: Tue Oct 2 08:01:33 2012 Кодировка:

TBLASTN 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= ASSY_ECOLI
(447 letters)

Database: 3g1
1077 sequences; 12,619,654 total letters

Searching...done

Score E
Sequences producing significant alignments: (bits) Value

embl|AE006120|AE006120 Pasteurella multocida subsp. multocida st... 718 0.0
embl|AE004330|AE004330 Vibrio cholerae O1 biovar eltor str. N169... 129 2e-30
embl|AE004773|AE004773 Pseudomonas aeruginosa PAO1, section 334 ... 121 4e-28
embl|AE004520|AE004520 Pseudomonas aeruginosa PAO1, section 81 o... 28 5.5
embl|AE004694|AE004694 Pseudomonas aeruginosa PAO1, section 255 ... 28 7.2

>embl|AE006120|AE006120 Pasteurella multocida subsp. multocida str.
Pm70 section 87 of 204 of the complete genome.
Length = 11573

Score = 718 bits (1853), Expect = 0.0
Identities = 356/438 (81%), Positives = 392/438 (89%), Gaps = 1/438 (0%)
Frame = -3

Query: 3 TILKHLPVGQRIGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEEDYDAIPRRAME 62
TIL+ LP GQ++GIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEEDY+AIPR+AME
Sbjct: 3591 TILQQLPKGQKVGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEEDYNAIPRKAME 3412

Query: 63 YGAENARLIDCRKQLVAEGIAAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDG 122
YGAENARLIDCR QL EGIAAIQ GAFH +TGG+TYFNTTPLGRAVTGTMLV+AM+ED
Sbjct: 3411 YGAENARLIDCRAQLAHEGIAAIQSGAFHISTGGVTYFNTTPLGRAVTGTMLVSAMREDD 3232

Query: 123 VNIWGDGSTYKGNDIERFYRYGLLTNAELQIYKPWLDTDFIDELGGRHEMSEFMIACGFD 182
VNIWGDGST+KGNDIERFYRYGLLTN L+IYKPWLD FI+ELGGRHEMSEF+IA GF+
Sbjct: 3231 VNIWGDGSTFKGNDIERFYRYGLLTNPNLKIYKPWLDNQFIEELGGRHEMSEFLIANGFE 3052

Query: 183 YKMSVEKAYSTDSNMLGATHEAKDLEYLNSSVKIVNPIMGVKFWDESVKIPAEEVTVRFE 242
YKMSVEKAYSTDSNMLGATHEAKDLE+LN+ ++IV PIMGV FW + V++ AEEVTVRFE
Sbjct: 3051 YKMSVEKAYSTDSNMLGATHEAKDLEFLNTGIRIVKPIMGVAFWRDDVEVKAEEVTVRFE 2872

Query: 243 QGHPVALNGKTFSDDVEMMLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLHI 302
+G PVALNGKTFSD VE+ LEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLHI
Sbjct: 2871 EGIPVALNGKTFSDHVELFLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLHI 2692

Query: 303 AYERLLTGIHNEDTIEQYHAHGRQLGRLLYQGRWFDSQALMLRDSLQRWVASQITGEVTL 362
AYERL++GIHNEDTIEQY +G +LGRLLYQGRWFD QALMLR++ QRWVA ITGEVT
Sbjct: 2691 AYERLVSGIHNEDTIEQYRINGLRLGRLLYQGRWFDPQALMLRETAQRWVARAITGEVTF 2512

Query: 363 ELRRGNDYSILNTVSENLTYKPERLTMEKGDSV-FSPDDRIGQLTMRNLDITDTREKLFG 421
ELRRGNDYSILNT S NLTY PERL+MEK ++ F P DRIGQLTMRNLDI DTR+KL
Sbjct: 2511 ELRRGNDYSILNTESPNLTYMPERLSMEKVENAPFDPVDRIGQLTMRNLDIVDTRDKLGI 2332

Query: 422 YAKTGLLSSSAASGVPQV 439
Y +TGLLS S S +PQ+
Sbjct: 2331 YTQTGLLSISKDSFLPQL 2278


>embl|AE004330|AE004330 Vibrio cholerae O1 biovar eltor str. N16961
chromosome I, section 238 of 251 of the complete
chromosome.
Length = 11523

Score = 129 bits (324), Expect = 2e-30
Identities = 101/359 (28%), Positives = 168/359 (46%), Gaps = 3/359 (0%)
Frame = -2

Query: 12 QRIGIAFSGGLDTSAALLWMRQK-GAVPYAYTANLGQPDEEDYDAIPRRAMEYGAENARL 70
+++ +A+SGGLDTS + W+++ A+ A++GQ DEE + +A+ GA +
Sbjct: 9503 KKVVVAYSGGLDTSVIIPWLKENYDCEVVAFVADVGQGDEE-LKGVEAKALSSGASECYI 9327

Query: 71 IDCRKQLVAEGI-AAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDG 129
+D +++ V E I ++ GA++ Y T + R V V ++ G + G
Sbjct: 9326 VDLKEEFVKEYIYPTLKTGAYYEGK----YLLGTSMARPVIAKAQVEIARKVGADALAHG 9159

Query: 130 STYKGNDIERFYRYGLLTNAELQIYKPWLDTDFIDELGGRHEMSEFMIACGFDYKMSVEK 189
T KGND RF +L + PW + D ++E I C S+ K
Sbjct: 9158 CTGKGNDQVRFEGAFAALAPDLHVIAPWREWDLRSREACLDYLAERNIPCA----ASLTK 8991

Query: 190 AYSTDSNMLGATHEAKDLEYLNSSVKIVNPIMGVKFWD-ESVKIPAEEVTVRFEQGHPVA 248
YS D+N A H + + L S+ N V D E AE VT++ G VA
Sbjct: 8990 IYSRDAN---AWHVSTEGGVLESTWNAPNEDCWVWTVDPEQAPNEAEYVTLQVAHGEVVA 8820

Query: 249 LNGKTFSDDVEMMLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLHIAYERLL 308
++G+ + +L N+ G +HG+G D +ENR++ KSRG YE PG ++ A +
Sbjct: 8819 VDGEAMTP-YNALLYLNQKGAKHGVGRIDIVENRLVGMKSRGCYETPGGTIIMEALRAVE 8643

Query: 309 TGIHNEDTIEQYHAHGRQLGRLLYQGRWFDSQALMLRDSLQRWVASQITGEVTLELRRG 367
+ ++ + E G + L+Y GRWF + + +A + GEV ++L +G
Sbjct: 8642 QLVLDKTSFEFREELGIKASHLVYDGRWFTPLRQAVFAAADE-LAKDVNGEVVIKLYKG 8469


>embl|AE004773|AE004773 Pseudomonas aeruginosa PAO1, section 334 of
529 of the complete genome.
Length = 10822

Score = 121 bits (304), Expect = 4e-28
Identities = 105/409 (25%), Positives = 189/409 (46%), Gaps = 10/409 (2%)
Frame = -2

Query: 12 QRIGIAFSGGLDTSAALLWMRQK-GAVPYAYTANLGQPDEEDYDAIPRRAMEYGAENARL 70
+++ +A+SGGLDTS L W++ +TA+LGQ +E + RAM G + +
Sbjct: 1902 KKVVLAYSGGLDTSVILKWLQDTYNCEVVTFTADLGQGEEVEPARAKARAM--GVKEIYI 1729

Query: 71 IDCRKQLVAEGIAAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGS 130
D R++ V + + + NT Y T + R + L+ E G + G+
Sbjct: 1728 DDLREEFVRDFVYPMFRA---NTVYEGEYLLGTSIARPLIAKRLIEIANETGADAISHGA 1558

Query: 131 TYKGNDIERFYRYGLLTNAELQIYKPWLDTDFIDELGGRHEMSEFMIACGFDYKMSVEKA 190
T KGND RF +++ PW + D + R ++ ++ G + +K
Sbjct: 1557 TGKGNDQVRFELGAYALKPGVKVIAPWREWDLLS----REKLMDYAEKHGIPIERHGKKK 1390

Query: 191 --YSTDSNMLGATHEAKDLEYLNSSVKIVNPIMGVKFWDESVKIPAEEVTVRFEQGHPVA 248
YS D+N+L ++E LE ++ + + E+ + + + +G VA
Sbjct: 1389 SPYSMDANLLHISYEGGVLE--DTWTEHEEDMWKWTASPENAPDTPTYIELTYRKGDIVA 1216

Query: 249 LNGKTFSDDVEMMLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLHIAYERLL 308
++GK + E++ E NR+GG +G+G D +ENR + KSRG YE PG ++ A+ +
Sbjct: 1215 IDGKDMTP-AEVLTELNRVGGINGIGRLDIVENRYVGMKSRGCYETPGGTIMLKAHRAI- 1042

Query: 309 TGIHNEDTIEQYHAHGR-----QLGRLLYQGRWFDSQALMLRDSLQRWVASQ--ITGEVT 361
T+++ AH + + L+Y G W+ + LML+ + ASQ + G V
Sbjct: 1041 ----ESITLDREVAHLKDELMPKYASLIYTGYWWSPERLMLQQMID---ASQVNVNGVVR 883

Query: 362 LELRRGNDYSILNTVSENLTYKPERLTMEKGDSVFSPDDRIGQLTMRNL 410
L+L +GN ++ S++ + T E+ ++ D G + + L
Sbjct: 882 LKLYKGN-VVVVGRKSDDSLFDANIATFEEDGGAYNQADAAGFIKLNAL 739


>embl|AE004520|AE004520 Pseudomonas aeruginosa PAO1, section 81 of 529
of the complete genome.
Length = 12217

Score = 28.1 bits (61), Expect = 5.5
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -2

Query: 272 GLGMSDQIENRIIEAKSRGIYEAPGMALLHIAYER 306
GLG+ +ENR++ + G+ EA G LLH+ +R
Sbjct: 7914 GLGLVT-LENRLLALRRLGLGEALGQHLLHLGIDR 7813


>embl|AE004694|AE004694 Pseudomonas aeruginosa PAO1, section 255 of
529 of the complete genome.
Length = 11017

Score = 27.7 bits (60), Expect = 7.2
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3

Query: 233 PAEEVTVRFEQGHPVALNGKTFSDDVE-MMLEANRIGGRHGLGMSDQIENRIIEAKSRGI 291
PAE TV E+ V + + D+VE ++ +A R+G H G+ +++A+ G
Sbjct: 1611 PAEHATVAEEEEQQVEHDAEA-DDEVEGVLADAERLGRHHLAGLHRHRGELLLQAREIGQ 1787

Query: 292 YEA 294
EA
Sbjct: 1788 VEA 1796


Database: 3g1
Posted date: Oct 2, 2006 2:39 AM
Number of letters in database: 12,619,654
Number of sequences in database: 1077

Lambda K H
0.317 0.135 0.397

Gapped
Lambda K H
0.267 0.0410 0.140


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,155,048
Number of Sequences: 1077
Number of extensions: 87400
Number of successful extensions: 404
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 317
Number of HSP's gapped (non-prelim): 135
length of query: 447
length of database: 4,206,551
effective HSP length: 97
effective length of query: 350
effective length of database: 4,102,082
effective search space: 1435728700
effective search space used: 1435728700
frameshift window, decay const: 40, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)