Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.cmm.msu.ru/~vlada/term3/tRNA.txt Дата изменения: Mon Nov 6 19:53:26 2006 Дата индексирования: Tue Oct 2 06:28:31 2012 Кодировка:

RNK.PDB
RNK.out
2 # duplex
29 # number of base-pairs
1 1 # explicit bp numbering/hetero atoms
1 73 0 # 1 | B:.501_:[..C]C-----G[..G]:.573_:B 0.51 0.15 26.86 8.75 -0.68
2 72 0 # 2 | B:.502_:[..C]C-----G[..G]:.572_:B 0.45 0.29 16.06 8.86 -0.47
3 71 0 # 3 | B:.503_:[..G]G-----C[..C]:.571_:B 0.34 0.30 13.55 8.95 -0.57
4 70 0 # 4 | B:.504_:[..G]G-----C[..C]:.570_:B 0.33 0.17 14.03 8.92 -0.82
5 69 0 # 5 | B:.505_:[..C]C-----G[..G]:.569_:B 0.27 0.11 13.46 8.89 -1.00
6 68 0 # 6 | B:.506_:[..G]G-----C[..C]:.568_:B 0.31 0.10 18.24 8.93 -0.99
7 67 0 # 7 | B:.507_:[..G]G-----C[..C]:.567_:B 0.33 0.24 11.66 8.94 -0.68
50 66 0 # 8 | B:.550_:[..G]G-----C[..C]:.566_:B 0.19 0.01 12.33 9.00 -1.29
51 65 0 # 9 | B:.551_:[..C]C-----G[..G]:.565_:B 0.35 0.05 15.42 8.82 -1.05
52 64 0 # 10 | B:.552_:[..U]U-*---G[..G]:.564_:B 2.42 0.13 10.86 8.73 2.67
53 63 0 # 11 | B:.553_:[..G]G-----C[..C]:.563_:B 0.53 0.35 13.28 8.85 -0.27
54 62 0 # 12 | B:.554_:[..G]G-----C[..C]:.562_:B 0.39 0.11 15.01 9.00 -0.88
55 59 0 # 13 | B:.555_:[..U]U-**--A[..A]:.559_:B 4.48 0.27 9.83 7.03 5.01
56 19 9 # 14 x B:.556_:[..U]U-**+-G[..G]:.519_:B 5.51 0.32 24.43 8.17 6.15
37 34 0 # 15 | B:.537_:[..A]A-**--U[..U]:.534_:B 4.24 0.81 27.52 7.61 5.87
39 33 0 # 16 | B:.539_:[..A]A-*---C[..C]:.533_:B 4.25 0.90 18.69 9.44 6.05
40 32 0 # 17 | B:.540_:[..U]U-----A[..A]:.532_:B 0.72 0.01 25.95 8.54 -0.75
41 31 0 # 18 | B:.541_:[..C]C-----G[..G]:.531_:B 0.81 0.08 16.91 9.30 -0.53
42 30 0 # 19 | B:.542_:[..C]C-----G[..G]:.530_:B 1.35 0.22 15.42 8.56 0.28
43 29 0 # 20 | B:.543_:[..G]G-----C[..C]:.529_:B 0.62 0.40 17.67 8.99 -0.08
44 28 0 # 21 | B:.544_:[..C]C-----G[..G]:.528_:B 0.58 0.46 14.04 8.85 -0.00
45 27 0 # 22 | B:.545_:[..A]A-*---G[..G]:.527_:B 1.27 0.25 21.48 10.57 1.78
10 26 0 # 23 | B:.510_:[..G]G-----C[..C]:.526_:B 0.55 0.02 10.26 8.93 -0.90
11 25 0 # 24 | B:.511_:[..U]U-----A[..A]:.525_:B 0.48 0.33 22.61 8.57 -0.35
12 24 0 # 25 | B:.512_:[..U]U-----A[..A]:.524_:B 0.48 0.33 9.67 8.81 -0.36
13 23 0 # 26 | B:.513_:[..C]C-----G[..G]:.523_:B 0.35 0.07 2.33 8.77 -1.01
14 8 0 # 27 | B:.514_:[..A]A-**--U[..U]:.508_:B 4.46 0.62 9.75 6.88 5.70
15 49 9 # 28 x B:.515_:[..G]G-**+-C[..C]:.549_:B 3.90 0.12 8.74 8.81 4.13
20 57 1 # 29 + B:.520_:[..G]G-----C[..C]:.557_:B 0.48 0.22 32.85 9.13 -0.57
##### Base-pair criteria used: 4.00 15.00 2.50 65.00 4.50 7.50
##### 8 non-Watson-Crick base-pairs, and 3 helices (1 isolated bp)
##### Helix #1 (14): 1 - 14 ***broken O3'[i] to P[i+1] linkage***
##### Helix #2 (14): 15 - 28 ***broken O3'[i] to P[i+1] linkage***
##### Helix #3 (1): 29