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MEGABLAST 2.2.10 [Oct-19-2004]


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences",
J Comput Biol 2000; 7(1-2):203-14.

Database: bs
1 sequences; 4,214,630 total letters

Searching. done
Query= Pro_tRNA_E.coli
(77 letters)



Score E
Sequences producing significant alignments: (bits) Value

AL009126_GR|AL009126_GR Bacillus subtilis (strain 168) chromosom... 64 1e-11

>AL009126_GR|AL009126_GR Bacillus subtilis (strain 168) chromosome, complete
sequence.
Length = 4214630

Score = 63.9 bits (32), Expect = 1e-11
Identities = 65/75 (86%), Gaps = 6/75 (8%)
Strand = Plus / Minus


Query: 6 agtagcgcagcttggtagcgcaac-tggtttgggaccagtggg-tcggaggttcgaatcc 63
|||||| ||||||||||| ||| | ||||||||||||| |||| ||| ||||||||||||
Sbjct: 3172164 agtagctcagcttggtagagca-catggtttgggacca-tggggtcgcaggttcgaatcc 3172107


Query: 64 tctct-cgccgacca 77
| ||| | |||||||
Sbjct: 3172106 tgtcttc-ccgacca 3172093



Score = 63.9 bits (32), Expect = 1e-11
Identities = 65/75 (86%), Gaps = 6/75 (8%)
Strand = Plus / Plus


Query: 6 agtagcgcagcttggtagcgcaac-tggtttgggacca-gtgggtcggaggttcgaatcc 63
|||||| ||||||||||| || || ||||||||||||| | |||||| ||||||||||||
Sbjct: 166172 agtagctcagcttggtagagc-acatggtttgggaccatg-gggtcgcaggttcgaatcc 166229


Query: 64 tctct-cgccgacca 77
| ||| | |||||||
Sbjct: 166230 tgtcttc-ccgacca 166243



Score = 63.9 bits (32), Expect = 1e-11
Identities = 65/75 (86%), Gaps = 6/75 (8%)
Strand = Plus / Plus


Query: 6 agtagcgcagcttggtagcgcaac-tggtttgggaccagtggg-tcggaggttcgaatcc 63
|||||| ||||||||||| || || ||||||||||||| |||| ||| ||||||||||||
Sbjct: 96062 agtagctcagcttggtagagc-acatggtttgggacca-tggggtcgcaggttcgaatcc 96119


Query: 64 tctct-cgccgacca 77
| ||| | |||||||
Sbjct: 96120 tgtcttc-ccgacca 96133



Score = 30.2 bits (15), Expect = 0.21
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 46 ggtcggaggttcgaatcct 64
||||| |||||||||||||
Sbjct: 950959 ggtcgtaggttcgaatcct 950977



Score = 30.2 bits (15), Expect = 0.21
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 46 ggtcggaggttcgaatcct 64
||||| |||||||||||||
Sbjct: 528308 ggtcgcaggttcgaatcct 528326



Score = 30.2 bits (15), Expect = 0.21
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 46 ggtcggaggttcgaatcct 64
||||| |||||||||||||
Sbjct: 165796 ggtcgtaggttcgaatcct 165814



Score = 22.3 bits (11), Expect = 51
Identities = 17/19 (89%)
Strand = Plus / Minus


Query: 46 ggtcggaggttcgaatcct 64
||||| |||||||| ||||
Sbjct: 3171870 ggtcgtaggttcgagtcct 3171852


Database: bs
Posted date: Oct 1, 2006 7:00 PM
Number of letters in database: 4,214,630
Number of sequences in database: 1

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 0, Extension: 0
Number of Hits to DB: 26
Number of Sequences: 1
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 1000000.0: 1
Number of HSP's better than 1000000.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 0
length of query: 77
length of database: 4,214,630
effective HSP length: 15
effective length of query: 62
effective length of database: 4,214,615
effective search space: 261306130
effective search space used: 0
S2: 4 ( 8.4 bits)