Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.cmm.msu.ru/~vasilisa/protocolkr.doc Дата изменения: Wed Oct 10 19:43:57 2007 Дата индексирования: Tue Oct 2 02:04:18 2012 Кодировка: koi8-r

Протокол к Credit1.

seqret AALF01000002.embl -sask
Reads and writes (returns) sequences
Begin at position [start]: 77001
End at position [end]: 81002
Reverse strand [N]: n

formatdb -i salty_proteome.fasta -n salt -p T

blastall -p blastx -d salt -i aalf01000002.fasta -o salty1.fasta -F F -e
0.001

Полученные результаты:

Q8ZPV2 ARGM_SALTY Succinylornithine transaminase (EC 2.6.1.-) (S... 566
e-162
P40732 ARGD_SALTY Acetylornithine/succinyldiaminopimelate aminot... 484
e-137
Q8ZPV1 Q8ZPV1_SALTY Arginine succinyltransferase (EC 2.3.1.109). 429
e-121
Q8ZPV0 Q8ZPV0_SALTY Succinylglutamic semialdehyde dehydrogenase ... 418
e-117
Q8ZMM1 Q8ZMM1_SALTY 4-aminobutyrate aminotransferase (EC 2.6.1.19). 219
1e-57
Q8ZLX7 Q8ZLX7_SALTY Putative acetylornithine aminotransferase (E... 187
6e-48
Q8ZQ48 Q8ZQ48_SALTY 4-hydroxyphenylacetate catabolism protein (E... 144
4e-35
Q8ZMM2 Q8ZMM2_SALTY NADP-dependent succinate-semialdehyde dehydr... 143
1e-34
P12677 BIOA_SALTY Adenosylmethionine-8-amino-7-oxononanoate amin... 140
8e-34
P21267 GSA_SALTY Glutamate-1-semialdehyde 2,1-aminomutase (EC 5.... 135
3e-32
Q8ZK61 Q8ZK61_SALTY Putative NAD-dependent aldehyde dehydrogenas... 132
2e-31
P10503 PUTA_SALTY Bifunctional protein putA [Includes: Proline d... 125
3e-29
Q8ZM28 Q8ZM28_SALTY Putative NAD-dependent aldehyde dehydrogenas... 122
2e-28
Q8ZL72 Q8ZL72_SALTY Aldehyde dehydrogenase B (EC 1.2.1.22). 122
2e-28
Q8ZPC9 Q8ZPC9_SALTY Putative aldehyde dehydrogenase (EC 1.2.1.8). 114
4e-26
Q8ZPI3 Q8ZPI3_SALTY Putative succinate-semialdehyde dehydrogenas... 111
4e-25
Q8ZJZ3 Q8ZJZ3_SALTY Putative NAD-dependent aldehyde dehydrogenas... 106
1e-23
Q8ZPC8 Q8ZPC8_SALTY Putative gntR family regulatory protein. 58
5e-09
P41793 EUTE_SALTY Ethanolamine utilization protein eutE. 48
6e-06
Q9XDN1 Q9XDN1_SALTY Propanediol utilization CoA-dependent propio... 45
4e-05
Q8ZNF9 Q8ZNF9_SALTY Putative galactonate dehydratase. 28
3.5
P96060 P96060_SALTY PhnW (2-aminoethylphosphonate transport) (EC... 27
7.9


Лучшее e-value: e-162
>Q8ZPV2 ARGM_SALTY Succinylornithine transaminase (EC 2.6.1.-)
(Succinylornithine aminotransferase).
Length = 408

Score = 566 bits (1459), Expect = e-162
Identities = 279/404 (69%), Positives = 326/404 (80%)
Frame = -1



>Q8ZPV0 Q8ZPV0_SALTY Succinylglutamic semialdehyde dehydrogenase (EC
1.2.1.-).
Length = 492

>Q8ZPV1 Q8ZPV1_SALTY Arginine succinyltransferase (EC 2.3.1.109).
Length = 344

Score = 429 bits (1102), Expect = e-121
Identities = 217/343 (63%), Positives = 263/343 (76%), Gaps = 1/343 (0%)
Frame = -1

Score = 418 bits (1075), Expect = e-117
Identities = 200/304 (65%), Positives = 243/304 (79%)
Frame = -3

3'-------------------------------------[<=ген bbbb, 3228-2017]-------5'
3'-------------------------------------[<=ген bbbb, 1965-940]-------5'
3'-------------------------------------[<=ген bbbb, 916-5]-------5'