Документ взят из кэша поисковой машины. Адрес оригинального документа : http://bioinf.fbb.msu.ru/RNA/kinetics/example.html
Дата изменения: Tue Oct 12 06:29:53 2010
Дата индексирования: Mon Oct 1 20:00:42 2012
Кодировка:
RNA kinetics server

RNA kinetics server

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Results for the query 655260670770989 will be stored here for 3 days

Sequence = GGCUUGUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCGGUGGUUCAAGUCCACUCAGGCCUACCA

Final time = 3.0

Number of runs = 100

Chain's growth constant = 40.0

Nucleation constant = 1.0E8

Number of structure permutations = 1176291

All helices
# sequence energy length k_break probability
1
8- gcuc -11
24- cgag -21
 -7.9 4 1.07*103
2
13- ggug -16
29- ccac -26
 -7.6 4 1.75*103
3
10- ucagg -14
34- agucc -30
 -9.899 5 5.23*101
4
29- cccu -32
40- ggga -37
 -8.7 4 2.93*102
5
26- caccc -30
42- guggg -38
 -10.9 5 1.03*101
6
26- cacc -29
51- gugg -48
 -7.6 4 1.75*103
7
0- ggcuug -5
60- cugaac -55
 -9.1 6 2.3*102
8
49- gugg -52
63- cacc -60
 -7.6 4 1.75*103
9
14- gugg -17
63- cacc -60
 -7.6 4 1.75*103
10
38- gggug -42
65- cucac -61
 -7.9 5 1.34*103
11
30- ccuga -34
68- ggacu -64
 -9.9 5 5.23*101
12
0- ggcuug -5
70- ccggac -65
 -11.499 6 4.67
13
43- agguc -47
71- uccgg -67
 -9.4 5 1.17*102
14
13- ggugg -17
74- ccauc -70
 -8.6 5 4.31*102
15
48- ggugg -52
74- ccauc -70
 -8.6 5 4.31*102
16
15- uggu -18
75- acca -72
 -7.6 4 1.75*103
17
50- uggu -53
75- acca -72
 -7.6 4 1.75*103

Helix probabilities

Click to obtain EPS source

All Structures
# Structure    Time    Energy Probability
1 1.12 -16.9
2 Click to obtain PS source 0.59 0 Click to enlarge
3 Click to obtain PS source 0.41 -2.999 Click to enlarge
4 Click to obtain PS source 0.22 -1.5 Click to enlarge
5 Click to obtain PS source 0.14 -6.5 Click to enlarge
6 Click to obtain PS source 0.11 -13.4 Click to enlarge
7 Click to obtain PS source 0.59*10-1 -14.7 Click to enlarge
8 Click to obtain PS source 0.57*10-1 -8.2 Click to enlarge
9 Click to obtain PS source 0.54*10-1 -6.6 Click to enlarge
10 Click to obtain PS source 0.54*10-1 -1.2 Click to enlarge
11 Click to obtain PS source 0.53*10-1 -12.5 Click to enlarge
12 Click to obtain PS source 0.37*10-1 -12.9 Click to enlarge
13 Click to obtain PS source 0.29*10-1 -8.7 Click to enlarge
14 Click to obtain PS source 0.1*10-1 -3.8 Click to enlarge
15 Click to obtain PS source 0.79*10-2 -4.6 Click to enlarge
16 Click to obtain PS source 0.74*10-2 -15.9 Click to enlarge
17 Click to obtain PS source 0.69*10-2 -11 Click to enlarge
18 Click to obtain PS source 0.31*10-2 -4.7 Click to enlarge
19 Click to obtain PS source 0.86*10-3 -6.3 Click to enlarge
20 Click to obtain PS source 0.17*10-3 -10.2 Click to enlarge
21 Click to obtain PS source 0.1*10-3 -10.8 Click to enlarge
22 Click to obtain PS source 0.48*10-4 -2 Click to enlarge
23 Click to obtain PS source 0.2*10-4 -8.9 Click to enlarge
24 Click to obtain PS source 0.14*10-4 -15 Click to enlarge
25 Click to obtain PS source 0.14*10-4 -10.3 Click to enlarge
26 Click to obtain PS source 0.11*10-4 -6.6 Click to enlarge
27 Click to obtain PS source 0.1*10-4 -2.3 Click to enlarge
28 Click to obtain PS source 0.83*10-5 -8.6 Click to enlarge
29 Click to obtain PS source 0.47*10-5 -9.9 Click to enlarge
30 Click to obtain PS source 0.46*10-5 -8.8 Click to enlarge
31 Click to obtain PS source 0.23*10-5 -2 Click to enlarge
32 Click to obtain PS source 0.75*10-6 -14 Click to enlarge
33 Click to obtain PS source 0.53*10-6 -6.35 Click to enlarge
34 Click to obtain PS source 0.14*10-7 -8.7 Click to enlarge
35 Click to obtain PS source 0.12*10-8 -14.4 Click to enlarge
36 Click to obtain PS source 0.55*10-9 -10.4 Click to enlarge
37 Click to obtain PS source 0.34*10-9 -14.6 Click to enlarge
38 Click to obtain PS source 0.17*10-9 -3.8 Click to enlarge
39 Click to obtain PS source 0.51*10-10 -10.8 Click to enlarge
40 Click to obtain PS source 0.48*10-10 -12.4 Click to enlarge
41 Click to obtain PS source 0.24*10-10 -10.799 Click to enlarge
42 Click to obtain PS source 0.19*10-10 -1.4 Click to enlarge
43 Click to obtain PS source 0.14*10-10 -12.6 Click to enlarge
44 Click to obtain PS source 0.12*10-10 -5 Click to enlarge
45 Click to obtain PS source 0.12*10-10 -10.4 Click to enlarge
46 Click to obtain PS source 0.8*10-11 -11.1 Click to enlarge
47 Click to obtain PS source 0.49*10-11 -6.7 Click to enlarge
48 Click to obtain PS source 0.45*10-11 -5.1 Click to enlarge
49 Click to obtain PS source 0.63*10-12 -3.1 Click to enlarge
50 Click to obtain PS source 0.5*10-12 -14.4 Click to enlarge
51 Click to obtain PS source 0.19*10-12 -0.5 Click to enlarge
52 Click to obtain PS source 0.17*10-12 -6.2 Click to enlarge
53 Click to obtain PS source 0.76*10-13 -3.2 Click to enlarge
54 Click to obtain PS source 0.71*10-13 -4.8 Click to enlarge
55 Click to obtain PS source 0.55*10-13 -6.9 Click to enlarge
56 Click to obtain PS source 0.55*10-13 -9.5 Click to enlarge
57 Click to obtain PS source 0.38*10-13 -9 Click to enlarge
58 Click to obtain PS source 0.12*10-13 -0.8 Click to enlarge
59 Click to obtain PS source 0.87*10-14 -9.3 Click to enlarge
60 Click to obtain PS source 0.67*10-14 -8.7 Click to enlarge
61 Click to obtain PS source 0.46*10-14 -10.9 Click to enlarge
62 Click to obtain PS source 0.29*10-14 -6.8 Click to enlarge
63 Click to obtain PS source 0.73*10-15 -1.7 Click to enlarge
Structure probabilities

Click to obtain PS source