Документ взят из кэша поисковой машины. Адрес оригинального документа : http://npidb.belozersky.msu.ru/pfambest/pfam.html
Дата изменения: Unknown
Дата индексирования: Sat Apr 9 22:25:21 2016
Кодировка:
NPIDB: Best resolution sample

Back to Pfam families list
Pfam ID ↓ Domain  PDB ID  Domain Kind  Res, A 
  2OG-FeII_Oxy_2   2OG-Fe(II) oxygenase superfamily 4nih A:18-210 dna 1.37
  5_3_exonuc   5'-3' exonuclease, C-terminal SAM fold 3zda A:160-250 dna 1.50
  5_3_exonuc_N   5'-3' exonuclease, N-terminal resolvase-like domain 2ihn A:27-186 dna 3.00
  7kD_DNA_binding   7kD DNA-binding domain 1xyi A:2-62 dna 1.45
  AAA   ATPase family associated with various cellular activities (AAA) 3u61 D:46-160 dna 3.20
  AAA_11   AAA domain 2xzl A:408-609 rna 2.40
  AAA_12   AAA domain 2xzo A:680-877 rna 2.40
  AAA_16   AAA ATPase domain 2v1u A:32-183 dna 3.10
  AAA_19   Part of AAA domain 4qqw A:291-370 dna 2.66
  AAA_22   AAA domain 2qby B:57-190 dna 3.35
  AAA_23   AAA domain 4w9m I:5-703 dna 2.70
  AAA_30   AAA domain 3gp8 A:338-526 dna 2.50
  AAA_33   AAA domain 4qm6 A:10-146 rna 1.50
  ABC_tran   ABC transporter 3pih B:600-837 dna 2.90
  ABC_tran_2   ABC transporter 3j5s D:230-312 rna 7.50
  Aconitase   Aconitase family (aconitate hydratase) 3snp A:54-564 rna 2.80
  Aconitase_C   Aconitase C-terminal domain 3snp A:692-821 rna 2.80
  Ada_Zn_binding   Metal binding domain of Ada 1u8b A:10-75 dna 2.10
  Adenine_glyco   Methyladenine glycosylase 2ofi A:6-184 dna 1.85
  AFT   Transcription factor AFT 4lmg B:51-108 dna 2.20
  AGT   DNA alpha-glucosyltransferase 1y8z B:1013-1171 dna 1.90
  Alba   Alba 3wbm B:10-74 rna 2.00
  Amidase   Amidase 3kfu H:19-448 rna 3.00
  Ank   Ankyrin repeat 4oav B:91-123 rna 2.10
  Ank_2   Ankyrin repeats (3 copies) 4oav B:25-89 rna 2.10
  Anticodon_1   Anticodon-binding domain of tRNA 4arc A:698-827 rna 2.00
  Antitoxin-MazE   Antidote-toxin recognition MazE 3zvk F:7-47 dna 2.50
  AP2   AP2 domain 3igm B:64-119 dna 2.20
  AP_endonuc_2   Xylose isomerase-like TIM barrel 2nq9 A:19-239 dna 1.45
  Arc   Arc-like DNA binding domain 1bdt B:4-53 dna 2.50
  Arena_nucleocap   Arenavirus nucleocapsid protein 4gv3 A:357-544 rna 1.68
  Arg_repressor   Arginine repressor, DNA binding domain 3lap C:16-91 dna 2.15
  Arg_tRNA_synt_N   Arginyl tRNA synthetase N terminal domain 2zue A:4-90 rna 2.00
  ATP-synt_ab   ATP synthase alpha/beta family, nucleotide-binding domain 3ice F:157-365 rna 2.80
  ATP_bind_3   PP-loop family 3a2k A:20-205 rna 3.65
  Avirulence   Xanthomonas avirulence protein, Avr/PthA 4gjr B:287-436 dna 1.85
  B2   RNA binding protein B2 2az0 A:2-71 rna 2.60
  B3   B3 DNA binding domain 4ldx B:124-226 dna 2.90
  B3_4   B3/4 domain 2iy5 B:209-385 rna 3.10
  Bac_DnaA   Bacterial dnaA protein 3r8f B:79-293 dna 3.37
  Bac_DnaA_C   Bacterial dnaA protein helix-turn-helix 3pvv B:412-480 dna 2.00
  Bac_DNA_binding   Bacterial DNA-binding protein 1p71 B:1-90 dna 1.90
  BAF   Barrier to autointegration factor 2bzf A:2-88 dna 2.87
  BAH   BAH domain 4da4 B:935-1103 dna 2.60
  BamHI   Restriction endonuclease BamHI 3bam A:1-168 dna 1.80
  BEN   BEN domain 4ix7 B:278-358 dna 1.58
  Beta-Casp   Beta-Casp domain 3ie1 A:228-351 rna 2.85
  BHD_1   Rad4 beta-hairpin domain 1 2qsh A:429-488 dna 2.81
  BHD_2   Rad4 beta-hairpin domain 2 2qsh A:490-543 dna 2.81
  BHD_3   Rad4 beta-hairpin domain 3 2qsh A:551-626 dna 2.81
  BpuJI_N   Restriction endonuclease BpuJI - N terminal 2vla A:1-280 dna 1.30
  BRCA-2_OB3   BRCA2, oligonucleotide/oligosaccharide-binding, domain 3 1mje A:2971-3109 dna 3.50
  Bromo_coat   Bromovirus coat protein 1cwp A:42-190 rna 3.20
  Bse634I   Cfr10I/Bse634I restriction endonuclease 3dvo B:48-332 dna 1.89
  BTD   Beta-trefoil DNA-binding domain 3iag C:205-354 dna 2.00
  Btz   CASC3/Barentsz eIF4AIII binding 2j0s T:169-216 rna 2.21
  Bunya_nucleocap   Bunyavirus nucleocapsid (N) protein 4jng A:7-229 rna 2.12
  Bunya_RdRp   Bunyavirus RNA dependent RNA polymerase 5amr A:596-1353 rna 2.57
  bZIP_1   bZIP transcription factor 1gd2 F:78-140 dna 2.00
  bZIP_2   Basic region leucine zipper 1gu4 A:270-323 dna 1.80
  bZIP_Maf   bZIP Maf transcription factor 2wt7 B:214-302 dna 2.30
  C1-set   Immunoglobulin C1-set domain 3agv B:352-437 rna 2.15
  C2-set_2   CD80-like C2-set immunoglobulin domain 3s59 A:124-219 dna 2.80
  CAF1   CAF1 family ribonuclease 2a1r B:1-392 rna 2.60
  CarD_CdnL_TRCF   CarD-like/TRCF domain 4xls M:3-113 dna 4.01
  Cass2   Integron-associated effector binding protein 3j16 A:28-174 rna 7.20
  Cas_Cas5d   CRISPR-associated protein (Cas_Cas5) 4u7u W:4-214 rna 3.00
  Cas_Cas6   CRISPR associated protein Cas6 3qjl A:91-238 rna 2.70
  Cas_Cmr3   CRISPR-associated protein (Cas_Cmr3) 3x1l B:4-321 hybrid 2.10
  Cas_Cmr5   CRISPR-associated protein (Cas_Cmr5) 3x1l F:5-151 hybrid 2.10
  Cas_csx3   CRISPR-associated protein (Cas_csx3) 3wzi B:15-91 rna 2.90
  Cas_Csy4   CRISPR-associated protein (Cas_Csy4) 2xlk A:4-187 hybrid 1.80
  Cas_CT1975   CT1975-like protein 4u7u G:5-358 rna 3.00
  Cauli_VI   Caulimovirus viroplasmin 3bsu G:27-70 hybrid 2.10
  CBFB_NFYA   CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 4g92 A:232-288 dna 1.80
  CBFD_NFYB_HMF   Histone-like transcription factor (CBF/NF-Y) and archaeal histone 4g92 C:85-149 dna 1.80
  Cdc6_C   CDC6, C terminal 2v1u A:308-389 dna 3.10
  CENP-B_N   CENP-B N-terminal DNA-binding domain 1hlv A:2-56 dna 2.50
  CENP-S   Kinetochore component CENP-S 4ne1 n:17-92 dna 6.50
  CENP-X   CENP-S associating Centromere protein X 4ne1 p:11-81 dna 6.50
  Clp1   Pre-mRNA cleavage complex II protein Clp1 4ohy A:232-423 rna 2.00
  cNMP_binding   Cyclic nucleotide-binding domain 1zrf A:20-111 dna 2.10
  Colicin-DNase   DNase/tRNase domain of colicin-like bacteriocin 1v15 C:3-131 dna 2.40
  Como_LCP   Large coat protein 1pgl 2:1-370 rna 2.80
  CPL   CPL (NUC119) domain 4wzw A:433-580 dna 2.95
  CR6_interact   Growth arrest and DNA-damage-inducible proteins-interacting protein 1 3j7y q:25-152 rna 3.40
  Cren7   Chromatin protein Cren7 3kxt A:5-59 dna 1.60
  CRISPR_assoc   CRISPR associated protein 2y8y A:1-211 rna 1.44
  CRISPR_Cse1   CRISPR-associated protein Cse1 (CRISPR_cse1) 4u7u M:2-464 rna 3.00
  CRISPR_Cse2   CRISPR-associated protein Cse2 (CRISPR_cse2) 4qyz B:20-153 hybrid 3.03
  Cro   Cro 3orc A:2-65 dna 3.00
  Crp   Bacterial regulatory proteins, crp family 1zrf A:165-196 dna 2.10
  CSD   'Cold-shock' DNA-binding domain 2hax B:2-66 dna 1.29
  CsrA   Global regulator protein family 4kji A:24-66 rna 3.20
  CtsR   Firmicute transcriptional repressor of class III stress genes (CtsR) 3h0d A:2-155 dna 2.40
  Cucumo_2B   Cucumovirus protein 2B 2zi0 B:6-57 rna 2.82
  CUT   CUT domain 2o4a A:370-448 dna 1.75
  Cyclin_N   Cyclin, N-terminal domain 2w2h B:9-149 rna 3.25
  Cytotoxic   Cytotoxic 2xfz Y:9-96 rna 3.20
  DALR_1   DALR anticodon binding domain 2zue A:507-629 rna 2.00
  DALR_2   DALR domain 1u0b B:341-402 rna 2.30
  DAP3   Mitochondrial ribosomal death-associated protein 3 5aj3 g:98-393 rna 3.60
  DbpA   DbpA RNA binding domain 3moj B:404-477 rna 2.90
  dCMP_cyt_deam_1   Cytidine and deoxycytidylate deaminase zinc-binding region 2b3j A:1-102 rna 2.00
  DcpS_C   Scavenger mRNA decapping enzyme C-term binding 4ndh A:166-278 dna 1.85
  DDE_Tnp_1   Transposase DDE domain 1mus F:124-363 dna 1.90
  DdrB   DdrB-like protein 4hqb B:1-135 dna 2.30
  DEAD   DEAD/DEAH box helicase 3pey A:116-281 rna 1.40
  Denso_VP4   Capsid protein VP4 4mgu A:23-415 dna 3.50
  DHHA1   DHHA1 domain 3wqy A:834-899 rna 3.30
  Dimer_Tnp_Tn5   Transposase Tn5 dimerisation domain 1mus F:359-476 dna 1.90
  DKCLD   DKCLD (NUC011) domain 3hax A:11-66 rna 2.11
  DM   DM DNA binding domain 4yj0 B:72-118 dna 3.81
  DnaB_C   DnaB-like helicase C terminal domain 4esv K:185-441 dna 3.20
  DNA_alkylation   DNA alkylation repair enzyme 3jxy A:8-221 dna 1.50
  DNA_binding_1   6-O-methylguanine DNA methyltransferase, DNA binding domain 4hdv A:4-90 dna 2.70
  DNA_gyraseB   DNA gyrase B 4gfh A:246-428 dna 4.41
  DNA_gyraseB_C   DNA gyrase B subunit, carboxyl terminus 2xcs B:544-634 dna 2.10
  DNA_ligase_aden   NAD-dependent DNA ligase adenylation domain 4glx A:3-318 dna 1.90
  DNA_ligase_A_C   ATP dependent DNA ligase C terminal region 3l2p A:617-727 dna 3.00
  DNA_ligase_A_M   ATP dependent DNA ligase domain 2q2t A:6-188 dna 2.30
  DNA_ligase_A_N   DNA ligase N terminus 1x9n A:287-465 dna 3.00
  DNA_ligase_OB   NAD-dependent DNA ligase OB-fold domain 4glx A:320-401 dna 1.90
  DNA_ligase_OB_2   DNA ligase OB-like domain 2q2t A:224-293 dna 2.30
  DNA_ligase_ZBD   NAD-dependent DNA ligase C4 zinc finger domain 4glx A:407-434 dna 1.90
  DNA_methylase   C-5 cytosine-specific DNA methylase 2c7p A:12-320 dna 1.70
  DNA_photolyase   DNA photolyase 1tez D:5-170 dna 1.80
  DNA_pol3_alpha   Bacterial DNA polymerase III alpha subunit 3f2b A:831-1255 dna 2.39
  DNA_pol3_beta   DNA polymerase III beta subunit, N-terminal domain 3bep B:1-120 dna 1.92
  DNA_pol3_beta_2   DNA polymerase III beta subunit, central domain 3bep B:129-243 dna 1.92
  DNA_pol3_delta2   DNA polymerase III, delta subunit 3glg D:20-179 dna 3.25
  DNA_pol3_delt_C   Processivity clamp loader gamma complex DNA pol III C-term 3glg A:214-333 dna 3.25
  DNA_pol_A   DNA polymerase family A 4yfu A:495-875 dna 1.50
  DNA_pol_A_exo1   3'-5' exonuclease 2kfz A:330-517 dna 2.03
  DNA_pol_B   DNA polymerase family B 3qex A:428-856 dna 1.73
  DNA_pol_B_2   DNA polymerase type B, organellar and viral 2py5 A:52-488 dna 1.60
  DNA_pol_B_exo1   DNA polymerase family B, exonuclease domain 3qex A:42-293 dna 1.73
  DNA_pol_B_palm   DNA polymerase beta palm 4kli A:149-262 dna 1.60
  DNA_pol_B_thumb   DNA polymerase beta thumb 4kli A:268-335 dna 1.60
  DNA_pol_lambd_f   Fingers domain of DNA polymerase lambda 4kli A:97-148 dna 1.60
  DNA_primase_S   Eukaryotic and archaeal DNA primase small subunit 4mky C:139-260 dna 2.40
  DNA_processg_A   DNA recombination-mediator protein A 4ljr B:6-206 dna 1.80
  DNA_topoisoIV   DNA gyrase/topoisomerase IV, subunit A 2xcs B:1033-1474 dna 2.10
  DRP   Dam-replacing family 4esj B:1-254 dna 2.05
  DSHCT   DSHCT (NUC185) domain 2xgj B:895-1073 rna 2.90
  dsrm   Double-stranded RNA binding motif 2nug A:152-217 rna 1.70
  DUF1115   Protein of unknown function (DUF1115) 4yhw A:339-467 rna 3.25
  DUF1713   Mitochondrial domain of unknown function (DUF1713) 5aj3 n:128-159 rna 3.60
  DUF1743   Domain of unknown function (DUF1743) 3amt A:139-252 rna 2.90
  DUF1785   Domain of unknown function (DUF1785) 4z4d A:175-227 rna 1.60
  DUF217   Uncharacterized ACR, COG1753 3fmt F:1-93 dna 2.98
  DUF2258   Uncharacterized protein conserved in archaea (DUF2258) 4pso C:3-82 dna 2.90
  DUF2276   Uncharacterized conserved protein (DUF2276) 4c8y A:120-235 hybrid 1.80
  DUF258   Protein of unknown function, DUF258 2ykr W:171-331 rna 9.80
  DUF3378   Domain of unknown function (DUF3378) 1ais A:127-175 dna 2.10
  DUF3578   Domain of unknown function (DUF3578) 3ssc B:5-155 dna 2.10
  DUF4102   Domain of unknown function (DUF4102) 3rmp A:3-78 dna 2.21
  DUF4152   Protein of unknown function (DUF4152) 4yoy E:1-227 dna 1.95
  DUF445   Protein of unknown function (DUF445) 4lln C:6-139 dna 2.84
  Dus   Dihydrouridine synthase (Dus) 3b0u X:7-312 rna 1.95
  DZR   Double zinc ribbon 1vqo 1:3-46 rna 2.20
  E2F_TDP   E2F/DP family winged-helix DNA-binding domain 1cf7 A:17-82 dna 2.60
  EAL   EAL domain 4afy A:444-678 rna 2.01
  EBV-NA1   Epstein Barr virus nuclear antigen-1, DNA-binding domain 1b3t A:461-606 dna 2.20
  EcoRI   Restriction endonuclease EcoRI 1cl8 A:17-273 dna 1.80
  EcoRII-C   EcoRII C terminal 2gb7 D:78-252 dna 1.70
  EcoRII-N   Restriction endonuclease EcoRII, N-terminal 3hqf A:12-168 dna 2.51
  EFG_C   Elongation factor G C-terminus 2om7 L:600-687 rna 7.30
  EFG_II   Elongation Factor G, domain II 4juw Y:404-478 rna 2.86
  EFG_IV   Elongation factor G, domain IV 4kjc V:486-609 rna 2.90
  EFP   Elongation factor P (EF-P) OB domain 3huy V:67-120 rna 3.10
  EFP_N   Elongation factor P (EF-P) KOW-like domain 3huy V:3-60 rna 3.10
  eIF-1a   Translation initiation factor 1A / IF-1 1hr0 W:5-70 rna 3.20
  eIF-3c_N   Eukaryotic translation initiation factor 3 subunit 8 N-terminus 4uer c:251-640 rna 6.47
  eIF-6   eIF-6 family 2x7n B:3-204 rna 11.80
  eIF2A   Eukaryotic translation initiation factor eIF2A 4uer b:458-685 rna 6.47
  eIF2_C   Initiation factor eIF2 gamma, C terminal 3qsy A:326-413 rna 3.20
  EIF_2_alpha   Eukaryotic translation initiation factor 2 alpha subunit 3qsy B:176-236 rna 3.20
  Elong-fact-P_C   Elongation factor P, C-terminal 3huw V:128-183 rna 3.10
  EMG1   EMG1/NEP1 methyltransferase 3oin B:43-246 rna 1.90
  EndIII_4Fe-2S   Iron-sulfur binding domain of endonuclease III 3fsp A:198-214 dna 2.20
  Endonuc-BglII   Restriction endonuclease BglII 1dfm A:10-171 dna 1.50
  Endonuc-BsobI   Restriction endonuclease BsobI 1dc1 B:5-323 dna 1.70
  Endonuc-dimeris   T4 recombination endonuclease VII, dimerisation 2qnf A:104-157 dna 3.00
  Endonuc-EcoRV   Restriction endonuclease EcoRV 1sx5 A:5-244 dna 1.50
  Endonuc-FokI_C   Restriction endonuclease FokI, C terminal 1fok A:387-579 dna 2.80
  Endonuc-HincII   Restriction endonuclease HincII 2gig A:2-257 dna 1.83
  Endonuc-MspI   Restriction endonuclease MspI 1sa3 A:2-262 dna 1.95
  Endonuc-PvuII   Restriction endonuclease PvuII 3pvi B:3-157 dna 1.59
  Endonuclease_1   Endonuclease I 1oup A:22-228 dna 2.30
  Endonuclease_5   Endonuclease V 4b20 B:19-217 dna 2.75
  Endonuclease_7   Recombination endonuclease VII 3gox B:102-187 dna 1.50
  Endonuc_BglI   Restriction endonuclease BglI 1dmu A:6-297 dna 2.20
  ERCC4   ERCC4 domain 4p0p A:273-415 dna 2.80
  eRF1_1   eRF1 domain 1 3j16 A:1-136 rna 7.20
  eRF1_2   eRF1 domain 2 3j16 A:141-274 rna 7.20
  eRF1_3   eRF1 domain 3 3j16 A:277-376 rna 7.20
  Ets   Ets-domain 1bc8 C:4-87 dna 1.93
  Exc   Excisionase-like protein 1rh6 B:1-52 dna 1.70
  Exonuc_V_gamma   Exodeoxyribonuclease V, gamma subunit 1w36 C:1-840 dna 3.10
  Exonuc_X-T_C   Exonuclease C-terminal 4jrp A:212-474 dna 1.95
  Exo_endo_phos   Endonuclease/Exonuclease/phosphatase family 4gz1 B:127-359 dna 1.50
  FAD_binding_7   FAD binding domain of DNA photolyase 1tez A:208-472 dna 1.80
  Fapy_DNA_glyco   Formamidopyrimidine-DNA glycosylase N-terminal domain 1k3x A:1-110 dna 1.25
  FDX-ACB   Ferredoxin-fold anticodon binding domain 3tup A:322-414 rna 3.05
  FemAB   FemAB family 4ii9 A:234-333 rna 1.66
  Fe_dep_repress   Iron dependent repressor, N-terminal DNA binding domain 2isz D:3-62 dna 2.40
  Fibrillarin   Fibrillarin 3pla F:6-231 rna 3.15
  Filo_VP35   Filoviridae VP35 3l25 E:218-340 rna 2.00
  Flavi_DEAD   Flavivirus DEAD domain 3o8c A:242-336 rna 2.00
  Flexi_CP   Viral coat protein 5a2t I:59-194 rna 5.60
  FLO_LFY   Floricaula / Leafy protein 4bhk B:189-346 dna 2.32
  Flp_C   Recombinase Flp protein 1flo A:136-380 dna 2.65
  Flp_N   Recombinase Flp protein N-terminus 1flo A:44-128 dna 2.65
  Flu_NS1   Influenza non-structural protein (NS1) 2zko A:1-70 rna 1.70
  Flu_PA   Influenza RNA-dependent RNA polymerase subunit PA 4wsb A:19-710 rna 2.65
  Flu_PB1   Influenza RNA-dependent RNA polymerase subunit PB1 4wsb B:1-742 rna 2.65
  Flu_PB2   Influenza RNA-dependent RNA polymerase subunit PB2 4wsb C:1-741 rna 2.65
  FokI_C   Restriction endonuclease FokI, catalytic domain 1fok A:146-290 dna 2.80
  FokI_N   Restriction endonuclease FokI, recognition domain 1fok A:4-143 dna 2.80
  Fork_head   Fork head domain 3l2c A:98-177 dna 1.87
  Formyl_trans_C   Formyl transferase, C-terminal domain 2fmt A:206-304 rna 2.80
  Formyl_trans_N   Formyl transferase 2fmt B:4-183 rna 2.80
  FtsJ   FtsJ-like methyltransferase 4n48 A:232-449 rna 2.70
  Ftsk_gamma   Ftsk gamma domain 2ve9 C:746-807 dna 1.90
  FUR   Ferric uptake regulator family 4mte C:19-140 dna 2.50
  GAD   GAD domain 1c0a A:307-406 rna 2.40
  Gal4_dimer   Gal4-like dimerisation domain 3coq A:50-96 dna 2.40
  GATA   GATA zinc finger 4hc9 A:264-298 dna 1.60
  GatB_N   GatB/GatE catalytic domain 3kfu F:3-283 rna 3.00
  GatB_Yqey   GatB domain 3kfu F:319-603 rna 3.00
  GCM   GCM motif protein 1odh A:29-169 dna 2.85
  GerE   Bacterial regulatory proteins, luxR family 1l3l D:162-228 dna 1.66
  GntR   Bacterial regulatory proteins, gntR family 4u0y C:11-74 dna 1.91
  gp45-slide_C   gp45 sliding clamp, C terminal 3u5z H:6113-6228 dna 3.50
  Gti1_Pac2   Gti1/Pac2 family 4qtj A:9-203 dna 2.10
  GTP1_OBG   GTP1/OBG 4csu 9:4-158 rna 5.50
  GTP_EFTU   Elongation factor Tu GTP binding domain 1b23 P:9-212 rna 2.60
  GTP_EFTU_D2   Elongation factor Tu domain 2 3avx A:509-578 rna 2.41
  GTP_EFTU_D3   Elongation factor Tu C-terminal domain 1b23 P:309-404 rna 2.60
  GTP_EFTU_D4   Elongation factor Tu domain 4 4byx V:459-547 rna 6.60
  H2TH   Formamidopyrimidine-DNA glycosylase H2TH domain 1k3x A:125-227 dna 1.25
  HD   HD domain 4x9e A:66-183 rna 3.10
  Helicase_C   Helicase conserved C-terminal domain 3pey A:348-431 rna 1.40
  Helicase_C_2   Helicase C-terminal domain 4a15 A:440-597 dna 2.20
  Herpes_alk_exo   Herpesvirus alkaline exonuclease 3pov A:27-478 dna 2.50
  HGTP_anticodon   Anticodon binding domain 1h4s B:289-384 rna 2.85
  HHH   Helix-hairpin-helix motif 1orn A:100-129 dna 1.70
  HhH-GPD   HhH-GPD superfamily base excision DNA repair protein 4ofa A:461-570 dna 1.55
  HHH_2   Helix-hairpin-helix motif 4glx A:510-573 dna 1.90
  HHH_4   Helix-hairpin-helix containing domain 3gpl A:184-242 dna 2.50
  HHH_5   Helix-hairpin-helix domain 4glx A:442-502 dna 1.90
  HHH_6   Helix-hairpin-helix motif 3f2b A:1356-1443 dna 2.39
  HHH_8   Helix-hairpin-helix domain 4lzg A:153-218 dna 1.60
  HIN   HIN-200/IF120x domain 4l5r C:58-224 dna 1.87
  HIRAN   HIRAN domain 4s0n A:60-155 dna 1.50
  Histone   Core histone H2A/H2B/H3/H4 1kx5 G:17-90 dna 1.94
  HIT   HIT domain 3spd D:44-156 dna 1.91
  Hjc   Archaeal holliday junction resolvase (hjc) 2wiw B:7-99 dna 1.80
  HLH   Helix-loop-helix DNA-binding domain 1nkp D:502-554 dna 1.80
  HMG_box   HMG (high mobility group) box 1qrv B:5-71 dna 2.20
  HMG_box_2   HMG-box domain 4qr9 A:5-78 dna 2.00
  HNF-1_N   Hepatocyte nuclear factor 1 (HNF-1), N terminus 1ic8 B:85-176 dna 2.60
  HNH_3   HNH endonuclease 1u3e M:53-98 dna 2.92
  Homeobox   Homeobox domain 3rkq B:139-193 dna 1.70
  Hom_end   Homing endonuclease 1lwt A:302-413 dna 3.20
  Hom_end_hint   Hom_end-associated Hint 1lwt A:1-454 dna 3.20
  HPD   Homeo-prospero domain 1xpx A:1246-1401 dna 2.80
  HRDC   HRDC domain 5c0y B:438-505 rna 2.10
  HSF_DNA-bind   HSF-type DNA-binding 3hts D:196-282 dna 1.75
  HTH_1   Bacterial regulatory helix-turn-helix protein, lysR family 4iht A:3-62 dna 3.00
  HTH_12   Ribonuclease R winged-helix domain 3j20 U:87-129 rna 6.60
  HTH_18   Helix-turn-helix domain 1bl0 A:33-112 dna 2.30
  HTH_19   Helix-turn-helix domain 4jcy B:3-70 dna 1.80
  HTH_24   Winged helix-turn-helix DNA-binding 4u7b A:77-112 dna 3.09
  HTH_27   Winged helix DNA-binding domain 3gfi A:37-102 dna 2.10
  HTH_3   Helix-turn-helix 2r1j R:10-64 dna 1.53
  HTH_31   Helix-turn-helix domain 4pu3 C:28-95 dna 3.39
  HTH_5   Bacterial regulatory protein, arsR family 4on0 A:28-74 dna 3.00
  HTH_7   Helix-turn-helix domain of resolvase 1jko C:139-183 dna 2.24
  HTH_8   Bacterial regulatory protein, Fis family 4ihw A:54-95 dna 2.70
  HTH_AsnC-type   AsnC-type helix-turn-helix domain 2e1c A:25-66 dna 2.10
  HTH_Crp_2   Crp-like helix-turn-helix domain 4i2o B:159-230 dna 1.77
  HTH_IclR   IclR helix-turn-helix domain 2xro A:16-67 dna 3.40
  HTH_Tnp_Tc3_1   Tc3 transposase 1tc3 C:203-252 dna 2.45
  HTH_Tnp_Tc5   Tc5 transposase DNA-binding domain 1hlv A:74-131 dna 2.50
  HutP   HutP 1wpu K:8-146 rna 1.48
  HxlR   HxlR-like helix-turn-helix 4hqe B:14-107 dna 2.30
  IBD   Transcription-initiator DNA-binding domain IBD 1pp7 U:6-112 dna 2.45
  IBR   IBR domain 4ujp c:14-72 rna 2.80
  Ig_2   Immunoglobulin domain 3s59 B:22-117 dna 2.80
  IL6   Interleukin-6/G-CSF/MGF family 4ni7 A:29-182 dna 2.40
  Img2   Mitochondrial large subunit ribosomal protein (Img2) 3j7y g:81-166 rna 3.40
  IMS   impB/mucB/samB family 4ecq A:12-228 dna 1.50
  IMS_C   impB/mucB/samB family C-terminal domain 4ecq A:307-429 dna 1.50
  IMS_HHH   IMS family HHH motif 4tqr A:168-199 dna 1.58
  IncA   IncA protein 1nkp E:706-783 dna 1.80
  IPPT   IPP transferase 3foz A:44-298 rna 2.50
  IRF   Interferon regulatory factor transcription factor 4hly B:3-107 dna 1.48
  KH_1   KH domain 2p2r A:289-351 dna 1.60
  KH_2   KH domain 3iev A:209-288 rna 1.90
  KH_5   NusA-like KH domain 2asb A:214-282 rna 1.50
  KH_dom-like   KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 3j8g X:378-458 rna 5.00
  KilA-N   KilA-N domain 4ux5 A:30-109 dna 2.40
  KorB   KorB domain 1r71 B:166-252 dna 2.20
  KOW   KOW motif 1vq8 T:44-75 hybrid 2.20
  KTI12   Chromatin associated protein KTI12 3add B:2-233 rna 2.40
  Ku   Ku70/Ku80 beta-barrel domain 1jey B:251-454 dna 2.50
  Ku_C   Ku70/Ku80 C-terminal arm 1jey B:473-545 dna 2.50
  Ku_N   Ku70/Ku80 N-terminal alpha/beta domain 1jey B:9-244 dna 2.50
  L51_S25_CI-B8   Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain 3j7y b:43-96 rna 3.40
  La   La domain 2voo A:17-75 rna 1.80
  LacI   Bacterial regulatory proteins, lacI family 1jft D:3-48 dna 2.50
  Lactamase_B   Metallo-beta-lactamase superfamily 5a0t B:27-237 rna 2.28
  Lactamase_B_2   Beta-lactamase superfamily domain 2fk6 C:32-270 rna 2.90
  LAG1-DNAbind   LAG1, DNA binding 3iag C:73-204 dna 2.00
  LAGLIDADG_1   LAGLIDADG endonuclease 1t9i A:13-112 dna 1.60
  LAGLIDADG_2   LAGLIDADG DNA endonuclease family 3c0w A:33-209 dna 2.20
  LAGLIDADG_3   LAGLIDADG-like domain 2vs7 A:11-98 dna 2.05
  Ldh_1_C   lactate/malate dehydrogenase, alpha/beta C-terminal domain 3zh2 C:152-315 dna 2.10
  Ldh_1_N   lactate/malate dehydrogenase, NAD binding domain 3zh2 A:5-149 dna 2.10
  Lectin_legB   Legume lectin domain 4tzd A:1-112 dna 3.20
  LepA_C   GTP-binding protein LepA C-terminus 4qjt y:496-602 rna 2.90
  Levi_coat   Levivirus coat protein 2bu1 B:2-128 rna 2.20
  LexA_DNA_bind   LexA DNA binding domain 3jso A:2-65 dna 2.29
  Linker_histone   linker histone H1 and H5 family 4qlc U:24-97 dna 3.50
  LRR_4   Leucine Rich repeats (2 copies) 3wpc A:220-256 dna 1.60
  LRR_8   Leucine rich repeat 3wpc B:618-665 dna 1.60
  LRR_9   Leucine-rich repeat 1a9n A:2-163 rna 2.38
  LSM   LSM domain 3rer F:6-64 rna 1.70
  Lys   C-type lysozyme/alpha-lactalbumin family 4m4o A:1-127 rna 2.00
  LytTR   LytTr DNA-binding domain 3bs1 A:149-238 dna 1.60
  Mab-21   Mab-21 protein 4o6a A:199-498 dna 1.86
  Macro   Macro domain 3gpq A:20-125 rna 2.00
  MarR   MarR family 4aik A:29-88 dna 1.85
  MarR_2   MarR family 3zpl A:38-99 dna 2.80
  MBD   Methyl-CpG binding domain 3vxv A:71-135 dna 2.00
  MerR_1   MerR HTH family regulatory protein 4wls B:2-69 dna 2.11
  Metallophos   Calcineurin-like phosphoesterase 4pei E:7-234 rna 1.95
  Methylase_S   Type I restriction modification DNA specificity domain 2y7h A:7-191 dna 18.00
  MethyltransfD12   D12 class N6 adenine-specific DNA methyltransferase 2g1p B:10-262 dna 1.89
  Methyltransf_23   Methyltransferase domain 3htx D:689-880 rna 3.10
  Methyltransf_26   Methyltransferase domain 2ih2 A:40-166 dna 1.61
  Methyltransf_4   Putative methyltransferase 4ox9 Y:7-107 rna 3.80
  MetJ   Met Apo-repressor, MetJ 1mjo D:1-104 dna 2.10
  Met_10   Met-10+ like-protein 2zzm A:95-289 rna 2.65
  MH1   MH1 domain 1ozj A:31-131 dna 2.40
  Microvir_J   Microvirus J protein 2bpa 3:2-37 dna 3.00
  MMR_HSR1   50S ribosome-binding GTPase 3r9w A:5-124 rna 2.05
  MobA_MobL   MobA/MobL family 4ht4 A:17-195 dna 2.91
  MobB   Molybdopterin guanine dinucleotide synthesis protein B 4ohy A:115-230 rna 2.00
  Mob_Pre   Plasmid recombination enzyme 4lvi A:2-194 dna 1.90
  MogR_DNAbind   DNA binding domain of the motility gene repressor (MogR) 3fdq A:9-143 dna 1.75
  MRP   Mitochondrial RNA binding protein MRP 2gje D:27-173 rna 3.37
  MRP-63   Mitochondrial ribosome protein 63 3j7y o:13-101 rna 3.40
  MRP-L27   Mitochondrial ribosomal protein L27 3j7y 9:15-135 rna 3.40
  MRP-L28   Mitochondrial ribosomal protein L28 3j7y 8:63-119 rna 3.40
  MRP-L47   Mitochondrial 39-S ribosomal protein L47 (MRP-L47) 3j7y Y:64-149 rna 3.40
  MRP-L51   Mitochondrial ribosomal subunit 3j7y i:38-127 rna 3.40
  MRP-S23   Mitochondrial ribosomal protein S23 5aj3 b:2-133 rna 3.60
  MRP-S24   Mitochondrial ribosome subunit S24 5aj3 C:36-167 rna 3.60
  MRP-S26   Mitochondrial ribosome subunit S26 5aj3 d:28-198 rna 3.60
  MRP-S28   Mitochondrial ribosomal subunit protein 5aj3 k:143-285 rna 3.60
  MRP-S32   Mitochondrial 28S ribosomal protein S32 3j7y a:104-142 rna 3.40
  MRP-S33   Mitochondrial ribosomal subunit S27 5aj3 i:6-100 rna 3.60
  MRP-S35   Mitochondrial ribosomal protein MRP-S35 5aj3 f:78-176 rna 3.60
  MRP_L53   39S ribosomal protein L53/MRP-L53 3j7y k:20-71 rna 3.40
  mTERF   mTERF 3mva O:73-396 dna 2.20
  MutH   DNA mismatch repair enzyme MutH 2aor B:58-157 dna 2.00
  MutS_I   MutS domain I 1wb9 A:11-123 dna 2.10
  MutS_III   MutS domain III 1wb9 A:271-560 dna 2.10
  MutS_IV   MutS family domain IV 1wb9 B:428-519 dna 2.10
  MvaI_BcnI   MvaI/BcnI restriction endonuclease family 2odi A:9-231 dna 1.45
  Myb_DNA-binding   Myb-like DNA-binding domain 3sjm A:447-495 dna 1.35
  Myb_DNA-bind_6   Myb-like DNA-binding domain 3ted A:1175-1251 dna 2.00
  N6_Mtase   N-6 DNA Methylase 4xqk A:840-1180 dna 2.70
  N6_N4_Mtase   DNA methylase 4zcf B:117-479 dna 2.60
  NaeI   Restriction endonuclease NaeI 1iaw A:12-309 dna 2.40
  NAM   No apical meristem (NAM) protein 3swp A:14-140 dna 4.11
  NDT80_PhoG   NDT80 / PhoG like DNA-binding family 1mnn A:105-334 dna 1.40
  NGF   Nerve growth factor family 4zbn B:4-114 dna 2.45
  NgoMIV_restric   NgoMIV restriction enzyme 1fiu D:12-286 dna 1.60
  NikR_C   NikR C terminal nickel binding domain 2hzv F:53-131 dna 3.10
  Nop   Putative snoRNA binding domain 2ozb E:186-333 rna 2.60
  Nop10p   Nucleolar RNA-binding protein, Nop10p family 3hax C:3-53 rna 2.11
  NOSIC   NOSIC (NUC001) domain 3pla B:139-191 rna 3.15
  NotI   Restriction endonuclease NotI 3c25 A:17-316 dna 2.50
  NTP_transf_2   Nucleotidyltransferase domain 2q66 A:72-161 rna 1.80
  NUDIX   NUDIX domain 4s2x A:8-151 rna 1.50
  NUDIX_2   Nucleotide hydrolase 3mdi A:35-222 rna 2.07
  NUDIX_4   NUDIX domain 3fsp A:241-353 dna 2.20
  NUMOD3   NUMOD3 motif (2 copies) 1i3j A:178-206 dna 2.20
  NUMOD4   NUMOD4 motif 1u3e M:1-47 dna 2.92
  NusB   NusB family 3r2c B:5-132 rna 1.90
  OAS1_C   2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus 4s3n A:155-345 rna 2.00
  OGG_N   8-oxoguanine DNA glycosylase, N-terminal domain 3ih7 A:25-141 dna 3.10
  Omega_Repress   Omega Transcriptional Repressor 2bnw A:23-71 dna 2.45
  P22_Cro   DNA-binding transcriptional regulator Cro 3qws A:2-62 dna 2.10
  P53   P53 DNA-binding domain 4ibu D:95-289 dna 1.70
  PAP_assoc   Cid1 family poly A polymerase 4nku A:267-336 rna 1.94
  PAP_central   Poly(A) polymerase central domain 2q66 A:6-352 rna 1.80
  PAP_RNA-bind   Poly(A) polymerase predicted RNA binding domain 2q66 A:353-529 rna 1.80
  Paramyxo_ncap   Paramyxovirus nucleocapsid protein 4xjn A:12-400 rna 3.11
  ParB   ParB family 3vwb A:182-246 dna 2.42
  PARP_regulatory   Poly A polymerase regulatory subunit 1av6 A:4-296 rna 2.80
  Parvo_coat   Parvovirus coat protein VP2 4g0r A:38-574 dna 2.70
  PAS   PAS fold 4zpk B:85-201 dna 3.60
  PAX   'Paired box' domain 1k78 A:19-140 dna 2.25
  PAZ   PAZ domain 4z4d A:235-371 rna 1.60
  PC4   Transcriptional Coactivator p15 (PC4) 2c62 A:62-117 dna 1.74
  PCNA_C   Proliferating cell nuclear antigen, C-terminal domain 3k4x A:127-269 dna 2.98
  PCNA_N   Proliferating cell nuclear antigen, N-terminal domain 3k4x A:253-393 dna 2.98
  PCRF   PCRF domain 3f1e X:79-196 rna 3.00
  PD-C2-AF1   POU domain, class 2, associating factor 1 1cqt I:300-321 dna 3.20
  PDCD9   Mitochondrial 28S ribosomal protein S30 (PDCD9) 3j7y s:41-429 rna 3.40
  PDDEXK_1   PD-(D/E)XK nuclease superfamily 3u4q B:789-1132 dna 2.80
  PDDEXK_5   PD-(D/E)XK endonuclease 2ost B:2-148 dna 3.10
  PemK   PemK-like protein 4mdx B:4-111 rna 1.50
  Penicillinase_R   Penicillinase repressor 1xsd A:8-122 dna 2.70
  Peptidase_A21   Peptidase family A21 2qqp F:557-623 rna 3.80
  Peptidase_A6   Peptidase A6 family 4ftb C:55-363 rna 2.70
  Peptidase_S48   Peptidase family S48 4izz A:54-202 dna 2.50
  Pept_tRNA_hydro   Peptidyl-tRNA hydrolase 3vjr A:8-192 rna 2.40
  Phage_CII   Bacteriophage CII protein 1zs4 C:4-82 dna 1.70
  Phage_coat   Phage PP7 coat protein 2qux Q:1-127 rna 2.44
  Phage_endo_I   Phage endonuclease I 2pfj B:16-145 dna 3.10
  Phage_F   Capsid protein (F protein) 2bpa 1:184-424 dna 3.00
  Phage_integrase   Phage integrase family 1xo0 B:138-331 dna 2.00
  Phage_integ_N   Bacteriophage lambda integrase, N-terminal domain 1z1b A:8-71 dna 3.80
  Phage_int_SAM_1   Phage integrase, N-terminal SAM-like domain 1p7d A:80-158 dna 2.95
  Phage_int_SAM_4   Phage integrase, N-terminal SAM-like domain 1xo0 G:26-102 dna 2.00
  Phe_tRNA-synt_N   Aminoacyl tRNA synthetase class II, N-terminal domain 2iy5 C:15-82 rna 3.10
  Phi-29_GP16_7   Bacteriophage phi-29 early protein GP16.7 2c5r F:66-128 dna 2.90
  Phi-29_GP4   Phi-29-like late genes activator (early protein GP4) 2fio A:2-124 dna 2.70
  Piwi   Piwi domain 4z4d A:517-818 rna 1.60
  Pkinase   Protein kinase domain 3uzt A:191-453 rna 3.51
  Plasmid_stabil   Plasmid stabilisation system protein 3kis y:5-85 rna 3.30
  Plasmid_Txe   Plasmid encoded toxin Txe 4byd Y:5-84 rna 3.35
  Pneumo_ncap   Pneumovirus nucleocapsid protein 2wj8 T:2-375 rna 3.29
  PNK3P   Polynucleotide kinase 3 phosphatase 3u7f B:165-327 dna 1.80
  PolC_DP2   DNA polymerase II large subunit DP2 3hax C:3-44 rna 2.11
  PolyA_pol   Poly A polymerase head domain 4wc2 A:13-139 rna 2.80
  PolyA_pol_RNAbd   Probable RNA and SrmB- binding site of polymerase A 4wc2 A:164-227 rna 2.80
  Polyoma_lg_T_C   Polyomavirus large T antigen C-terminus 4gdf B:265-627 dna 2.80
  POT1   Telomeric single stranded DNA binding POT1/CDC13 1xjv A:11-141 dna 1.73
  Pou   Pou domain - N-terminal to homeobox domain 1e3o C:1-75 dna 1.90
  Pox_polyA_pol   Poxvirus poly(A) polymerase nucleotidyltransferase domain 3er9 B:109-279 rna 2.06
  Pox_polyA_pol_C   Poxvirus poly(A) polymerase C-terminal domain 3er8 C:282-479 hybrid 3.18
  Pox_polyA_pol_N   Poxvirus poly(A) polymerase N-terminal domain 3er9 B:12-117 rna 2.06
  PPR   PPR repeat 4m59 A:246-276 rna 2.46
  PPR_2   PPR repeat family 4m59 A:278-322 rna 2.46
  PPV_E1_C   Papillomavirus helicase 1ksy A:166-303 dna 3.05
  PPV_E2_C   E2 (early) protein, C terminal 2bop A:328-407 dna 1.70
  PQQ_2   PQQ-like domain 3vh0 D:67-310 dna 2.90
  PriCT_1   Primase C terminal 1 (PriCT-1) 3vw4 B:172-238 dna 2.70
  PseudoU_synth_1   tRNA pseudouridine synthase 2nqp D:14-112 rna 3.50
  PseudoU_synth_2   RNA pseudouridylate synthase 4lgt D:68-202 rna 1.30
  PspA_IM30   PspA/IM30 family 1fos F:279-322 dna 3.05
  PUA   PUA domain 1r3e A:239-315 rna 2.10
  PUF   Pumilio-family RNA binding repeat 3qgc A:351-376 rna 1.90
  Pur_DNA_glyco   Methylpurine-DNA glycosylase (MPG) 1ewn A:87-284 dna 2.10
  Put_DNA-bind_N   Putative DNA-binding protein N-terminus 3ikt A:1-50 dna 2.26
  Pyr_excise   Pyrimidine dimer DNA glycosylase 2fcc B:2-136 dna 2.30
  R-HINP1I   R.HinP1I restriction endonuclease 2fl3 A:41-245 dna 2.39
  Rad4   Rad4 transglutaminase-like domain 2qsh A:284-426 dna 2.81
  RAI1   RAI1 like PD-(D/E)XK nuclease 4j7m A:235-303 rna 1.70
  RAMPs   RAMP superfamily 3x1l H:102-338 hybrid 2.10
  Rap1-DNA-bind   Rap1, DNA-binding 1ign A:448-592 dna 2.25
  Ras   Ras family 3a6p C:12-170 rna 2.92
  RdRP_1   RNA dependent RNA polymerase 3bso A:20-488 rna 1.74
  RdRP_3   Viral RNA dependent RNA polymerase 4wtl A:3-514 rna 2.00
  RdRP_4   Viral RNA-directed RNA-polymerase 2r7w A:25-748 rna 2.60
  RdRP_5   Reovirus RNA-dependent RNA polymerase lambda 3 1n35 A:2-1263 rna 2.50
  RecA   recA bacterial DNA recombination protein 3cmw A:3008-3329 dna 2.80
  Recombinase   Recombinase 4kis B:171-254 dna 3.20
  Rep_3   Initiator Replication protein 1rep C:15-242 dna 2.60
  Rep_fac-A_C   Replication factor-A C terminal domain 4gnx C:470-615 dna 2.80
  Rep_N   Rep protein catalytic domain like 1uut A:4-189 dna 2.00
  ResIII   Type III restriction enzyme, res subunit 2d7d A:10-132 dna 2.10
  Resolvase   Resolvase, N terminal domain 1gdt A:3-139 dna 3.00
  RestrictionMunI   Type II restriction enzyme MunI 1d02 B:3-202 dna 1.70
  REV   REV protein (anti-repression trans-activator protein) 4pmi C:13-64 rna 3.20
  RE_Eco29kI   Eco29kI restriction endonuclease 3mx4 F:40-210 dna 2.50
  RE_EcoO109I   Type II restriction endonuclease EcoO109I 1wte B:5-230 dna 1.90
  RE_HindIII   HindIII restriction endonuclease 3wvk C:6-296 dna 2.00
  RE_NgoFVII   NgoFVII restriction endonuclease 4rdm B:181-318 dna 2.70
  RE_R_Pab1   R.Pab1 restriction endonuclease 3waz B:105-224 dna 3.00
  RF-1   RF-1 domain 3f1e X:226-338 rna 3.00
  RFX_DNA_binding   RFX DNA-binding domain 1dp7 P:1-76 dna 1.50
  Rhabdo_ncap   Rhabdovirus nucleocapsid protein 2gic B:10-405 rna 2.92
  RHD   Rel homology domain (RHD) 1a3q A:40-220 dna 2.10
  RHH_1   Ribbon-helix-helix protein, copG family 1b01 B:4-42 dna 2.56
  Rho_RNA_bind   Rho termination factor, RNA-binding domain 2a8v A:49-118 rna 2.40
  Ribonuclease   ribonuclease 1brn L:20-109 dna 1.76
  Ribonuclease_P   Ribonuclease P 3q1q A:6-116 rna 3.80
  Ribonuclease_T2   Ribonuclease T2 family 2z70 A:11-224 dna 1.70
  Ribonucleas_3_3   Ribonuclease-III-like 2nug B:17-138 rna 1.70
  Ribosomal_L1   Ribosomal protein L1p/L10e family 3umy A:8-221 rna 1.90
  Ribosomal_L10   Ribosomal protein L10 4hub G:11-109 rna 2.40
  Ribosomal_L11   Ribosomal protein L11, RNA binding domain 1vq8 I:71-139 hybrid 2.20
  Ribosomal_L11_N   Ribosomal protein L11, N-terminal domain 1mms A:8-66 rna 2.57
  Ribosomal_L12   Ribosomal protein L7/L12 C-terminal domain 4kdb e:59-122 rna 3.50
  Ribosomal_L13   Ribosomal protein L13 1vqo J:9-117 rna 2.20
  Ribosomal_L13e   Ribosomal protein L13e 4ujq N:7-173 rna 2.80
  Ribosomal_L14   Ribosomal protein L14p/L23e 1vq8 K:11-132 hybrid 2.20
  Ribosomal_L14e   Ribosomal protein L14 4ujq O:54-130 rna 2.80
  Ribosomal_L15e   Ribosomal L15 1vq8 M:3-192 hybrid 2.20
  Ribosomal_L16   Ribosomal protein L16p/L10e 1vq8 H:2-165 hybrid 2.20
  Ribosomal_L17   Ribosomal protein L17 4rb6 R:20-117 rna 2.40
  Ribosomal_L18ae   Ribosomal L18ae/LX protein domain 4a1d X:18-141 rna 3.52
  Ribosomal_L18e   Ribosomal protein L18e/L15 1vq8 L:16-143 hybrid 2.20
  Ribosomal_L18p   Ribosomal L18p/L5e family 1vq8 N:9-129 hybrid 2.20
  Ribosomal_L18_c   Ribosomal L18 C-terminal region 4ujq G:192-289 rna 2.80
  Ribosomal_L19   Ribosomal protein L19 4rb8 T:4-116 rna 2.40
  Ribosomal_L19e   Ribosomal protein L19e 1vqo P:1-143 rna 2.20
  Ribosomal_L2   Ribosomal Proteins L2, RNA binding domain 1vqo A:10-82 rna 2.20
  Ribosomal_L20   Ribosomal protein L20 4rb8 U:2-109 rna 2.40
  Ribosomal_L21e   Ribosomal protein L21e 1vqo Q:1-95 rna 2.20
  Ribosomal_L21p   Ribosomal prokaryotic L21 protein 4rb6 V:1-94 rna 2.40
  Ribosomal_L22   Ribosomal protein L22p/L17e 1vq8 R:16-149 hybrid 2.20
  Ribosomal_L22e   Ribosomal L22e protein family 4a1d M:12-111 rna 3.52
  Ribosomal_L23   Ribosomal protein L23 1vqo S:2-81 rna 2.20
  Ribosomal_L23eN   Ribosomal protein L23, N-terminal domain 4a1c R:30-58 rna 3.52
  Ribosomal_L24e   Ribosomal protein L24e 1vq8 U:4-56 hybrid 2.20
  Ribosomal_L25p   Ribosomal L25p family 1dfu P:4-91 rna 1.80
  Ribosomal_L27   Ribosomal L27 protein 4rb6 0:2-82 rna 2.40
  Ribosomal_L27e   Ribosomal L27e protein family 4a1d N:52-144 rna 3.52
  Ribosomal_L28   Ribosomal L28 family 4rb6 1:3-71 rna 2.40
  Ribosomal_L28e   Ribosomal L28e protein family 4a19 O:4-118 rna 3.52
  Ribosomal_L29   Ribosomal L29 protein 1vq8 V:5-63 hybrid 2.20
  Ribosomal_L29e   Ribosomal L29e protein family 4a18 T:3-42 rna 3.52
  Ribosomal_L2_C   Ribosomal Proteins L2, C-terminal domain 1vq8 A:88-221 hybrid 2.20
  Ribosomal_L3   Ribosomal protein L3 1vq8 B:45-312 hybrid 2.20
  Ribosomal_L30   Ribosomal protein L30p/L7e 1vqo W:1-52 rna 2.20
  Ribosomal_L30_N   Ribosomal L30 N-terminal domain 4ujs Q:22-81 rna 2.80
  Ribosomal_L31   Ribosomal protein L31 4rb8 4:1-66 rna 2.40
  Ribosomal_L31e   Ribosomal protein L31e 1vqo X:7-86 rna 2.20
  Ribosomal_L32e   Ribosomal protein L32 1vqo Y:124-231 rna 2.20
  Ribosomal_L32p   Ribosomal L32p protein family 4rb6 5:5-60 rna 2.40
  Ribosomal_L33   Ribosomal protein L33 4rb6 6:6-53 rna 2.40
  Ribosomal_L34   Ribosomal protein L34 4rb8 7:1-44 rna 2.40
  Ribosomal_L34e   Ribosomal protein L34e 4a1d L:2-96 rna 3.52
  Ribosomal_L35Ae   Ribosomal protein L35Ae 4a19 H:14-107 rna 3.52
  Ribosomal_L35p   Ribosomal protein L35 4rb8 8:2-62 rna 2.40
  Ribosomal_L36   Ribosomal protein L36 4rb8 9:1-37 rna 2.40
  Ribosomal_L36e   Ribosomal protein L36e 4a19 Q:2-103 rna 3.52
  Ribosomal_L37ae   Ribosomal L37ae protein family 1vqo Z:10-82 rna 2.20
  Ribosomal_L37e   Ribosomal protein L37e 1vqo 1:2-56 rna 2.20
  Ribosomal_L38e   Ribosomal L38e protein family 4a19 P:2-77 rna 3.52
  Ribosomal_L39   Ribosomal L39 protein 1vq8 2:7-49 hybrid 2.20
  Ribosomal_L4   Ribosomal protein L4/L1 family 1vqo C:16-246 rna 2.20
  Ribosomal_L40e   Ribosomal L40e family 4a19 K:78-128 rna 3.52
  Ribosomal_L41   Ribosomal protein L41 3jam h:1-25 rna 3.46
  Ribosomal_L44   Ribosomal protein L44 1vq8 3:16-92 hybrid 2.20
  Ribosomal_L5   Ribosomal protein L5 1vqo D:11-64 rna 2.20
  Ribosomal_L50   Ribosomal subunit 39S 3j7y h:58-158 rna 3.40
  Ribosomal_L5_C   ribosomal L5P family C-terminus 1vqo D:68-148 rna 2.20
  Ribosomal_L6   Ribosomal protein L6 1vq8 E:7-79 hybrid 2.20
  Ribosomal_L6e   Ribosomal protein L6e 4ujs P:71-133 rna 2.80
  Ribosomal_L7Ae   Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 1sds C:12-106 rna 1.80
  Ribosomal_L9_C   Ribosomal protein L9, C-terminal domain 3j8g H:62-149 rna 5.00
  Ribosomal_L9_N   Ribosomal protein L9, N-terminal domain 4rb8 I:1-48 rna 2.40
  Ribosomal_S10   Ribosomal protein S10p/S20e 3r2d J:47-81 rna 2.20
  Ribosomal_S11   Ribosomal protein S11 4rb5 K:17-126 rna 2.40
  Ribosomal_S13   Ribosomal protein S13/S18 4rb5 M:3-109 rna 2.40
  Ribosomal_S13_N   Ribosomal S13/S15 N-terminal domain 4ujp O:2-60 rna 2.80
  Ribosomal_S14   Ribosomal protein S14p/S29e 4rb7 N:7-60 rna 2.40
  Ribosomal_S15   Ribosomal protein S15 4rb5 O:6-88 rna 2.40
  Ribosomal_S16   Ribosomal protein S16 4rb5 P:8-67 rna 2.40
  Ribosomal_S17   Ribosomal protein S17 4rb7 Q:8-76 rna 2.40
  Ribosomal_S17e   Ribosomal S17 4ujr v:2-122 rna 2.80
  Ribosomal_S18   Ribosomal protein S18 4rb7 R:28-79 rna 2.40
  Ribosomal_S19   Ribosomal protein S19 4rb7 S:3-83 rna 2.40
  Ribosomal_S19e   Ribosomal protein S19e 4ujp U:4-144 rna 2.80
  Ribosomal_S2   Ribosomal protein S2 4rb7 B:10-226 rna 2.40
  Ribosomal_S20p   Ribosomal protein S20 4rb5 T:8-90 rna 2.40
  Ribosomal_S21   Ribosomal protein S21 4tpe U:4-54 rna 2.80
  Ribosomal_S21e   Ribosomal protein S21e 4ujr z:1-82 rna 2.80
  Ribosomal_S24e   Ribosomal protein S24e 4ujp Z:23-106 rna 2.80
  Ribosomal_S25   S25 ribosomal protein 4ujp a:36-105 rna 2.80
  Ribosomal_S26e   Ribosomal protein S26e 4ujp b:2-98 rna 2.80
  Ribosomal_S27   Ribosomal protein S27a 4ujp g:101-147 rna 2.80
  Ribosomal_S27e   Ribosomal protein S27 4ujp c:28-82 rna 2.80
  Ribosomal_S28e   Ribosomal protein S28e 4ujp d:5-67 rna 2.80
  Ribosomal_S30   Ribosomal protein S30 4ujp f:3-60 rna 2.80
  Ribosomal_S30AE   Sigma 54 modulation protein / S30EA ribosomal protein 3v2c Y:2-95 rna 2.70
  Ribosomal_S3Ae   Ribosomal S3Ae family 4ujp C:20-222 rna 2.80
  Ribosomal_S3_C   Ribosomal protein S3, C-terminal domain 4rb5 C:119-202 rna 2.40
  Ribosomal_S4   Ribosomal protein S4/S9 N-terminal domain 4rb5 D:2-98 rna 2.40
  Ribosomal_S4e   Ribosomal family S4e 4ujp F:94-170 rna 2.80
  Ribosomal_S5   Ribosomal protein S5, N-terminal domain 4rb5 E:5-71 rna 2.40
  Ribosomal_S5_C   Ribosomal protein S5, C-terminal domain 4rb5 E:80-152 rna 2.40
  Ribosomal_S6   Ribosomal protein S6 4rb5 F:2-93 rna 2.40
  Ribosomal_S6e   Ribosomal protein S6e 4ujp H:1-127 rna 2.80
  Ribosomal_S7   Ribosomal protein S7p/S5e 4rb7 G:2-149 rna 2.40
  Ribosomal_S7e   Ribosomal protein S7e 4ujp I:6-187 rna 2.80
  Ribosomal_S8   Ribosomal protein S8 4rb5 H:4-138 rna 2.40
  Ribosomal_S8e   Ribosomal protein S8e 4ujr m:2-184 rna 2.80
  Ribosomal_S9   Ribosomal protein S9/S16 4rb7 I:8-128 rna 2.40
  Ribosomal_TL5_C   Ribosomal protein TL5, C-terminal domain 4rb8 Z:121-174 rna 2.40
  Ribosom_S12_S23   Ribosomal protein S12/S23 4rb7 L:5-126 rna 2.40
  Ribos_L4_asso_C   60S ribosomal protein L4 C-terminal domain 4ujs N:272-352 rna 2.80
  RIG-I_C-RD   C-terminal domain of RIG-I 3eqt B:550-671 rna 2.00
  RIP   Ribosome inactivating protein 3rtj A:10-221 rna 3.00
  RMF   Ribosome modulation factor 3v24 V:3-55 rna 3.00
  RMMBL   RNA-metabolising metallo-beta-lactamase 5a0t A:364-403 rna 2.28
  RnaseA   Pancreatic ribonuclease 1oj8 A:2-99 dna 1.70
  RNaseH_C   T4 RNase H, C terminal 2ihn A:183-305 dna 3.00
  RNase_E_G   Ribonuclease E/G family 2vrt D:121-399 rna 3.50
  RNase_H   RNase H 4htu A:70-177 dna 1.49
  RNase_HII   Ribonuclease HII 3o3f A:15-188 hybrid 2.00
  RNase_H_2   RNase_H superfamily 1x9m A:2-186 dna 2.10
  RNase_PH   3' exoribonuclease family, domain 1 2jea H:36-171 rna 2.33
  RNase_PH_C   3' exoribonuclease family, domain 2 2jea B:159-224 rna 2.33
  RNase_T   Exonuclease 3v9w B:20-194 dna 1.70
  RNA_ligase   RNA ligase 2hvr B:28-227 hybrid 2.45
  RNA_pol   DNA-dependent RNA polymerase 1msw D:449-883 hybrid 2.10
  RNA_pol_A_CTD   Bacterial RNA polymerase, alpha chain C terminal domain 1lb2 E:250-309 dna 3.10
  RNA_pol_Rpb1_1   RNA polymerase Rpb1, domain 1 2o5i N:2-618 hybrid 2.50
  RNA_pol_Rpb1_2   RNA polymerase Rpb1, domain 2 2o5i N:620-765 hybrid 2.50
  RNA_pol_Rpb1_4   RNA polymerase Rpb1, domain 4 4bxx A:693-800 hybrid 3.28
  RNA_pol_Rpb1_5   RNA polymerase Rpb1, domain 5 2o5i D:1064-1437 hybrid 2.50
  RNA_pol_Rpb2_1   RNA polymerase beta subunit 2o5i C:17-389 hybrid 2.50
  RNA_pol_Rpb2_2   RNA polymerase Rpb2, domain 2 4oin C:142-334 dna 2.80
  RNA_pol_Rpb2_3   RNA polymerase Rpb2, domain 3 2o5i M:393-462 hybrid 2.50
  RNA_pol_Rpb2_6   RNA polymerase Rpb2, domain 6 2o5i M:541-1026 hybrid 2.50
  RNA_pol_Rpb2_7   RNA polymerase Rpb2, domain 7 2o5i C:1028-1104 hybrid 2.50
  RNA_pol_Rpb5_N   RNA polymerase Rpb5, N-terminal domain 3m4o E:3-101 hybrid 3.57
  RNA_replicase_B   RNA replicase, beta-chain 3avx A:717-1264 rna 2.41
  RNB   RNB domain 2vnu D:531-863 rna 2.30
  Rotavirus_VP1   Rotavirus VP1 structural protein 2r7r A:828-878 rna 2.60
  Rota_NSP3   Rotavirus non-structural protein NSP3 1knz C:7-163 rna 2.45
  RPOL_N   DNA-directed RNA polymerase N-terminal 1msw D:34-325 hybrid 2.10
  Rpp20   Rpp20 subunit of nuclear RNase MRP and P 3iab B:28-135 rna 2.70
  RQC   RQC domain 3aaf B:958-1061 dna 1.90
  RRF   Ribosome recycling factor 4gas Y:19-183 rna 3.30
  Rrf2   Transcriptional regulator 4hf1 A:1-83 dna 2.22
  RRM_1   RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2xs2 A:42-109 rna 1.35
  RRM_3   RNA binding motif 4erd A:379-531 rna 2.59
  RRM_5   RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1sj3 P:30-87 rna 2.20
  RRM_6   RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) 4qu6 A:152-223 rna 1.75
  RrnaAD   Ribosomal RNA adenine dimethylase 3ftf A:1-245 rna 2.80
  RS4NT   RS4NT (NUC023) domain 4ujp F:3-40 rna 2.80
  RTC   RNA 3'-terminal phosphate cyclase 4o8j A:4-327 rna 2.04
  RTP   Replication terminator protein 2efw F:8-122 dna 2.50
  Runt   Runt domain 4l18 E:52-193 dna 2.30
  RusA   Endodeoxyribonuclease RusA 2h8c B:8-117 dna 3.10
  RuvA_C   RuvA, C-terminal domain 1c7y j:158-203 dna 3.10
  RuvC   Crossover junction endodeoxyribonuclease RuvC 4ld0 A:3-154 dna 3.75
  RVT_1   Reverse transcriptase (RNA-dependent DNA polymerase) 4xpc A:93-273 dna 1.68
  RVT_connect   Reverse transcriptase connection domain 4pqu C:317-419 hybrid 2.51
  RVT_thumb   Reverse transcriptase thumb domain 4pqu C:238-307 hybrid 2.51
  S1   S1 RNA binding domain 2ix1 A:557-640 rna 2.74
  S10_plectin   Plectin/S10 domain 4ujp L:3-96 rna 2.80
  S4   S4 domain 4lgt A:3-50 rna 1.30
  SAD_SRA   SAD/SRA domain 3fde B:420-590 dna 1.41
  SAM_2   SAM domain (Sterile alpha motif) 2f8k A:448-510 rna 2.00
  SAP   SAP domain 4qoz E:76-110 rna 2.30
  SASP   Small, acid-soluble spore proteins, alpha/beta type 2z3x A:2-57 dna 2.10
  SecM   Secretion monitor precursor protein (SecM) 3j46 n:32-100 rna 10.10
  SecY   SecY translocase 2wwb A:75-459 rna 6.48
  SelB-wing_2   Elongation factor SelB, winged helix 2uwm A:447-504 rna 2.31
  SelB-wing_3   Elongation factor SelB, winged helix 1wsu A:580-632 rna 2.30
  SeqA   SeqA protein 1j3e A:4-116 dna 2.50
  Seryl_tRNA_N   Seryl-tRNA synthetase N-terminal domain 1ser B:501-605 rna 2.90
  Sigma70_r1_2   Sigma-70 factor, region 1.2 3ugo A:93-129 dna 2.10
  Sigma70_r2   Sigma-70 region 2 4lup A:25-92 dna 1.20
  Sigma70_r3   Sigma-70 region 3 4oin F:266-345 dna 2.80
  Sigma70_r4   Sigma-70, region 4 1ais B:1254-1294 dna 2.10
  Sigma70_r4_2   Sigma-70, region 4 2h27 D:128-181 dna 2.30
  SLBP_RNA_bind   Histone RNA hairpin-binding protein RNA-binding domain 4qoz C:128-199 rna 2.30
  SmpB   SmpB protein 2czj C:2-72 rna 3.01
  SNF2_N   SNF2 family N-terminal domain 1z63 A:447-720 dna 3.00
  Spo0A_C   Sporulation initiation factor Spo0A C terminal 1lq1 A:156-261 dna 2.30
  SRF-TF   SRF-type transcription factor (DNA-binding and dimerisation domain) 1egw A:9-59 dna 1.50
  SRP-alpha_N   Signal recognition particle, alpha subunit, N-terminal 2go5 1:26-130 rna 7.40
  SRP14   Signal recognition particle 14kD protein 1e8o D:4-94 rna 3.20
  SRP19   SRP19 protein 1jid A:16-116 rna 1.80
  SRP54   SRP54-type protein, GTPase domain 4c7o B:99-300 rna 2.60
  SRP54_N   SRP54-type protein, helical bundle domain 3ndb B:5-82 rna 3.00
  SRP9-21   Signal recognition particle 9 kDa protein (SRP9) 1e8o A:3-74 rna 3.20
  SRP_SPB   Signal peptide binding domain 1hq1 A:9-79 rna 1.52
  SSB   Single-strand binding protein family 3ulp D:82-193 dna 2.10
  STAT_bind   STAT protein, DNA binding domain 1bg1 D:321-574 dna 2.25
  Stm1_N   Stm1 4ujs H:23-62 rna 2.80
  SUI1   Translation initiation factor SUI1 3jam j:23-101 rna 3.46
  Sulf_coat_C   Sulfolobus virus coat protein C terminal 3j9x 6:59-127 dna 3.80
  T-box   T-box 1h6f B:104-285 dna 1.70
  T4-Gluco-transf   Bacteriophage T4 beta-glucosyltransferase 1m5r B:1-38 dna 1.80
  Tap-RNA_bind   Tap, RNA-binding 3rw6 A:118-200 rna 2.30
  Taq-exonuc   Taq polymerase, exonuclease 4bwj A:294-420 dna 1.55
  TaqI_C   TaqI-like C-terminal specificity domain 2ih2 A:290-405 dna 1.61
  TatD_DNase   TatD related DNase 4pe8 A:2-257 dna 2.89
  TBP   Transcription factor TFIID (or TATA-binding protein, TBP) 1ytb B:63-147 dna 1.80
  TCR   Tesmin/TSO1-like CXC domain, cysteine-rich domain 4rkg A:523-566 dna 2.50
  TEBP_beta   Telomere-binding protein beta subunit (TEBP beta) 1jb7 B:9-224 dna 1.86
  Telomerase_RBD   Telomerase ribonucleoprotein complex - RNA binding domain 4o26 A:426-561 rna 3.00
  Tenui_N   Tenuivirus/Phlebovirus nucleocapsid protein 4csf M:5-229 rna 2.60
  Ter   DNA replication terminus site-binding protein (Ter protein) 2i06 A:8-307 dna 2.20
  TetR_N   Bacterial regulatory proteins, tetR family 4gck C:16-62 dna 2.05
  Tet_JBP   Oxygenase domain of the 2OGFeDO superfamily 4nm6 A:1290-1905 dna 2.03
  TFIIA   Transcription factor IIA, alpha/beta subunit 1nh2 C:230-285 dna 1.90
  TFIIB   Transcription factor TFIIB repeat 1ais B:1212-1282 dna 2.10
  TFIIS_C   Transcription factor S-II (TFIIS) 3po3 S:269-307 hybrid 3.30
  TF_Zn_Ribbon   TFIIB zinc-binding 4bbs M:22-66 hybrid 3.60
  TGT   Queuine tRNA-ribosyltransferase 1q2r A:138-379 rna 2.90
  TGT_C1   C1 domain of tRNA-guanine transglycosylase dimerisation 1j2b B:361-430 rna 3.30
  TGT_C2   Patch-forming domain C2 of tRNA-guanine transglycosylase 1j2b A:437-507 rna 3.30
  ThaI   Restriction endonuclease ThaI 3ndh B:14-215 dna 1.30
  THAP   THAP domain 3kde C:1-76 dna 1.74
  Thg1   tRNAHis guanylyltransferase 3wc2 A:5-137 rna 3.64
  Thg1C   Thg1 C terminal domain 3wc2 D:138-268 rna 3.64
  ThiI   Thiamine biosynthesis protein (ThiI) 4kr6 B:172-369 rna 2.85
  Thioredoxin   Thioredoxin 1t8e B:3-106 dna 2.54
  THUMP   THUMP domain 4kr6 A:25-162 rna 2.85
  TIG   IPT/TIG domain 1p7h N:581-675 dna 2.60
  TilS   TilS substrate binding domain 3a2k B:256-326 rna 3.65
  TilS_C   TilS substrate C-terminal domain 3a2k A:384-457 rna 3.65
  Tim44   Tim44-like domain 3j7y d:118-266 rna 3.40
  TMF_TATA_bd   TATA element modulatory factor 1 TATA binding 1fos G:142-196 dna 3.05
  TMV_coat   Virus coat protein (TMV like) 2tmv P:1-145 rna 2.90
  Tna_leader   Tryptophanese operon leader peptide 4uy8 7:5-24 rna 3.80
  Tnp_DNA_bind   Transposase DNA-binding 1mus A:11-69 dna 1.90
  TNV_CP   Satellite tobacco necrosis virus coat protein 3s4g A:12-195 rna 6.00
  Tombus_P19   Tombusvirus P19 core protein 1r9f A:25-148 rna 1.85
  Topoisom_bac   DNA topoisomerase 1mw8 X:156-565 dna 1.90
  Topoisom_I   Eukaryotic DNA topoisomerase I, catalytic core 2h7g X:62-296 dna 1.90
  Topoisom_I_N   Eukaryotic DNA topoisomerase I, DNA binding fragment 1a31 A:215-429 dna 2.10
  Topo_C_assoc   C-terminal topoisomerase domain 1a31 A:624-765 dna 2.10
  Toprim   Toprim domain 1mw8 X:4-142 dna 1.90
  Toprim_N   DNA primase catalytic core, N-terminal domain 3b39 B:126-252 dna 2.35
  Tower   Tower 1mje A:2752-2792 dna 3.50
  ToxN_toxin   Toxin ToxN, type III toxin-antitoxin system 2xdb A:1-160 rna 2.55
  TPR_11   TPR repeat 4hor A:337-411 rna 1.86
  TRAM   TRAM domain 2bh2 B:16-67 rna 2.15
  Translin   Translin family 3zc0 F:14-189 rna 2.98
  Transposase_1   Transposase (partial DDE domain) 4u7b B:161-241 dna 3.09
  Trans_reg_C   Transcriptional regulatory protein, C terminal 1gxp A:149-225 dna 2.50
  Tra_M   TraM protein, DNA-binding 4qpq E:2-51 dna 3.11
  Trigger_N   Bacterial trigger factor protein (TF) 2d3o 1:10-109 rna 3.35
  TrmB   Sugar-specific transcriptional regulator TrmB 5bpd C:10-78 dna 2.40
  tRNA-synt_1   tRNA synthetases class I (I, L, M and V) 4arc A:411-574 rna 2.00
  tRNA-synt_1b   tRNA synthetases class I (W and Y) 1j1u A:24-300 rna 1.95
  tRNA-synt_1c   tRNA synthetases class I (E and Q), catalytic domain 1n78 A:1-312 rna 2.10
  tRNA-synt_1c_C   tRNA synthetases class I (E and Q), anti-codon binding domain 1qtq A:339-527 rna 2.25
  tRNA-synt_1d   tRNA synthetases class I (R) 2zue A:99-361 rna 2.00
  tRNA-synt_1e   tRNA synthetases class I (C) catalytic domain 1u0b B:14-314 rna 2.30
  tRNA-synt_1g   tRNA synthetases class I (M) 2ct8 B:122-359 rna 2.70
  tRNA-synt_1_2   Leucyl-tRNA synthetase, Domain 2 4arc A:221-404 rna 2.00
  tRNA-synt_2   tRNA synthetases class II (D, K and N) 1c0a A:117-559 rna 2.40
  tRNA-synt_2b   tRNA synthetase class II core domain (G, H, P, S and T) 1h4s A:46-220 rna 2.85
  tRNA-synt_2c   tRNA synthetases class II (A) 3wqy A:64-592 rna 3.30
  tRNA-synt_2d   tRNA synthetases class II core domain (F) 3tup A:183-307 rna 3.05
  tRNA_anti-codon   OB-fold nucleic acid binding domain 4oww B:22-105 dna 2.30
  tRNA_int_endo   tRNA intron endonuclease, catalytic C-terminal domain 2gjw A:219-302 rna 2.85
  tRNA_m1G_MT   tRNA (Guanine-1)-methyltransferase 4yvj B:22-221 rna 2.90
  tRNA_Me_trans   tRNA methyl transferase 2der B:6-360 rna 3.10
  tRNA_NucTransf2   tRNA nucleotidyltransferase, second domain 3ovb B:146-256 rna 1.95
  tRNA_SAD   Threonyl and Alanyl tRNA synthetase second additional domain 1qf6 A:171-219 rna 2.90
  tRNA_U5-meth_tr   tRNA (Uracil-5-)-methyltransferase 2bh2 A:95-432 rna 2.15
  TROVE   TROVE domain 1yvp B:16-369 rna 2.20
  TrpBP   Tryptophan RNA-binding attenuator protein 1gtf L:5-74 rna 1.75
  Trp_repressor   Trp repressor protein 1tro A:17-104 dna 1.90
  TruB-C_2   Pseudouridine synthase II TruB, C-terminal 1k8w A:252-309 rna 1.85
  TruB_N   TruB family pseudouridylate synthase (N terminal domain) 1k8w A:33-180 rna 1.85
  TrwC   TrwC relaxase 1omh A:4-292 dna 1.95
  Trypsin   Trypsin 4lz1 H:16-238 dna 1.65
  Tudor-knot   RNA binding activity-knot of a chromodomain 3oa6 A:11-74 dna 2.35
  Tymo_coat   Tymovirus coat protein 1ddl B:7-178 rna 2.70
  Tyr-DNA_phospho   Tyrosyl-DNA phosphodiesterase 1rff A:163-582 dna 1.70
  T_Ag_DNA_bind   Origin of replication binding protein 2itl G:136-229 dna 1.65
  U1snRNP70_N   U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 4pkd B:84-160 rna 2.50
  UDG   Uracil DNA glycosylase superfamily 4uqm A:68-229 dna 1.35
  UQ_con   Ubiquitin-conjugating enzyme 4r8p L:205-342 dna 3.28
  UvdE   UV-endonuclease UvdE 4gle A:3-259 dna 2.70
  UvrD-helicase   UvrD/REP helicase N-terminal domain 2is6 B:10-272 dna 2.20
  UvrD_C   UvrD-like helicase C-terminal domain 2is6 B:277-617 dna 2.20
  UvrD_C_2   UvrD-like helicase C-terminal domain 3gpl A:585-686 dna 2.50
  V-set   Immunoglobulin V-set domain 4z8f H:1-111 dna 1.75
  Val_tRNA-synt_C   Valyl tRNA synthetase tRNA binding arm 1gax B:797-862 rna 2.90
  Viral_coat   Viral coat protein (S domain) 4fy2 k:52-238 rna 2.90
  Viral_helicase1   Viral (Superfamily 1) RNA helicase 4n0o E:154-390 dna 2.65
  VirDNA-topo-I_N   Viral DNA topoisomerase I, N-terminal 2h7g X:4-61 dna 1.90
  VP40   Matrix protein VP40 1h2c A:69-192 rna 1.60
  VRR_NUC   VRR-NUC domain 4ri8 A:893-1008 dna 2.90
  Vsr   DNA mismatch endonuclease Vsr 1cw0 A:2-76 dna 2.30
  VWA   von Willebrand factor type A domain 3hxo A:514-691 dna 2.40
  WD40   WD domain, G-beta repeat 4ujp h:97-135 rna 2.80
  WGR   WGR domain 4dqy F:549-633 dna 3.25
  Whirly   Whirly transcription factor 3n1i A:62-200 dna 2.20
  XPA_C   XPA protein C-terminus 5a3d B:222-273 dna 1.80
  XPG_I   XPG I-region 1rxw A:139-235 dna 2.00
  XPG_N   XPG N-terminal domain 1rxw A:7-101 dna 2.00
  Xpo1   Exportin 1-like protein 3icq T:101-253 rna 3.20
  XRN_N   XRN 5'-3' exonuclease N-terminus 2y35 A:1-227 dna 3.20
  Y1_Tnp   Transposase IS200 like 2xo6 A:17-136 dna 1.90
  YqaJ   YqaJ-like viral recombinase domain 3sm4 B:23-168 dna 1.88
  YTH   YT521-B-like domain 4rcj A:388-526 rna 1.60
  z-alpha   Adenosine deaminase z-alpha domain 3eyi B:105-161 dna 1.45
  zf-C2H2   Zinc finger, C2H2 type 4m9v F:139-161 dna 0.97
  zf-C4   Zinc finger, C4 type (two domains) 3g9m A:438-507 dna 1.61
  zf-CCCH   Zinc finger C-x8-C-x5-C-x3-H type (and similar) 3d2s D:180-206 rna 1.70
  zf-CCCH_2   Zinc finger C-x8-C-x5-C-x3-H type 4lj0 A:404-421 rna 2.15
  zf-CCHC   Zinc knuckle 3ts2 B:137-154 rna 2.01
  zf-CXXC   CXXC zinc finger domain 4z3c C:52-88 dna 1.57
  zf-Di19   Drought induced 19 protein (Di19), zinc-binding 2drp A:109-165 dna 2.80
  zf-FPG_IleRS   Zinc finger found in FPG and IleRS 1k3x A:234-262 dna 1.25
  zf-H2C2_2   Zinc-finger double domain 4x9j A:121-146 dna 1.41
  zf-His_Me_endon   Zinc-binding loop region of homing endonuclease 1a73 B:65-150 dna 1.80
  zf-PARP   Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region 3od8 B:12-90 dna 2.40
  zf-RanBP   Zn-finger in Ran binding protein and others 3g9y A:67-94 rna 1.40
  zf-ribbon_3   zinc-ribbon domain 3j44 g:13-38 rna 9.00
  zf-U1   U1 zinc finger 4pjo m:2-38 rna 3.30
  zinc_ribbon_2   zinc-ribbon domain 2i13 B:79-115 dna 1.96
  Zn_clus   Fungal Zn(2)-Cys(6) binuclear cluster domain 3coq A:9-47 dna 2.40
  Zn_ribbon_recom   Recombinase zinc beta ribbon domain 4kis C:267-333 dna 3.20
© NPIDB team 2003 - 2016

text