Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.genebee.msu.ru/phylogeny/Domains_sets2-4.doc Дата изменения: Wed Apr 14 11:59:42 2010 Дата индексирования: Mon Oct 1 19:27:50 2012 Кодировка:

The list of Archaea domains composed the orthologuos groups of the set 2,
3 and 4
Pfam AC Pfam ID Description
PF00164 Ribosomal_S12 Ribosomal protein S12
PF00177 Ribosomal_S7 Ribosomal protein S7p/S5e
PF00181 Ribosomal_L2 Ribosomal Proteins L2, RNA binding domain
PF00189 Ribosomal_S3_C Ribosomal protein S3, C-terminal domain
PF00203 Ribosomal_S19 Ribosomal protein S19
PF00237 Ribosomal_L22 Ribosomal protein L22p/L17e
PF00238 Ribosomal_L14 Ribosomal protein L14p/L23e
PF00252 Ribosomal_L16 Ribosomal protein L16p/L10e
PF00253 Ribosomal_S14 Ribosomal protein S14p/S29e
PF00276 Ribosomal_L23 Ribosomal protein L23
PF00281 Ribosomal_L5 Ribosomal protein L5
PF00297 Ribosomal_L3 Ribosomal protein L3
PF00298 Ribosomal_L11 Ribosomal protein L11, RNA binding domain
PF00312 Ribosomal_S15 Ribosomal protein S15
PF00327 Ribosomal_L30 Ribosomal protein L30p/L7e
PF00333 Ribosomal_S5 Ribosomal protein S5, N-terminal domain
PF00338 Ribosomal_S10 Ribosomal protein S10p/S20e
PF00344 SecY eubacterial secY protein
PF00366 Ribosomal_S17 Ribosomal protein S17
PF00380 Ribosomal_S9 Ribosomal protein S9/S16
PF00410 Ribosomal_S8 Ribosomal protein S8
PF00411 Ribosomal_S11 Ribosomal protein S11
PF00416 Ribosomal_S13 Ribosomal protein S13/S18
PF00562 NA_pol_Rpb2_6 RNA polymerase Rpb2, domain 6
PF00572 Ribosomal_L13 Ribosomal protein L13
PF00573 Ribosomal_L4 Ribosomal protein L4/L1 family
PF00673 Ribosomal_L5_C ribosomal L5P family C-terminus
PF00679 EFG_C Elongation factor G C-terminus
PF00687 Ribosomal_L1 Ribosomal protein L1p/L10e family
PF00710 Asparaginase Asparaginase
PF00736 EF1_GNE EF-1 guanine nucleotide exchange domain
Asparaginase
PF00749 tRNA-synt_1c tRNA synthetases class I (E and Q),
catalytic domain
PF00814 Peptidase_M22 Glycoprotease family
PF00827 Ribosomal_L15e Ribosomal protein L15
PF00861 Ribosomal_L18p Ribosomal L18p/L5e family
PF00867 XPG_I XPG I-region
PF00900 Ribosomal_S4e Ribosomal family S4e
PF00935 Ribosomal_L44 Ribosomal protein L44
PF01015 Ribosomal_S3Ae Ribosomal S3Ae family
PF01090 Ribosomal_S19e Ribosomal protein S19e
PF01092 Ribosomal_S6e Ribosomal protein S6e
PF01157 Ribosomal_L21e Ribosomal protein L21e
PF01172 SBDS Shwachman-Bodian-Diamond syndrome (SBDS)
protein
PF01191 RNA_pol_Rpb5_C RNA polymerase Rpb5, C-terminal domain
PF01194 RNA_pol_N RNA polymerases N / 8 kDa subunit
PF01198 Ribosomal_L31e Ribosomal protein L31e
PF01248 Ribosomal_L7Ae Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
PF01269 Fibrillarin Fibrillarin
PF01280 Ribosomal_L19e Ribosomal protein L19e
PF01351 RNase_HII Ribonuclease HII
PF01409 tRNA-synt_2d tRNA synthetases class II core domain (F)
PF01411 tRNA-synt_2c tRNA synthetases class II (A)
PF01479 S4 S4 domain
PF01655 Ribosomal_L32e Ribosomal protein L32
PF01667 Ribosomal_S27e Ribosomal protein S27
PF01780 Ribosomal_L37ae Ribosomal L37ae protein family
PF01798 Nop Putative snoRNA binding domain
PF01920 Prefoldin_2 Prefoldin subunit
PF01981 PTH2 Peptidyl-tRNA hydrolase PTH2
PF01984 dsDNA_bind Double-stranded DNA-binding domain
PF02005 TRM N2,N2-dimethylguanosine tRNA methyltransferase
PF02934 GatB_N GatB/GatE catalytic domain
PF03143 GTP_EFTU_D3 Elongation factor Tu C-terminal domain
PF03484 B5 tRNA synthetase B5 domain
PF03719 Ribosomal_S5_C Ribosomal protein S5, C-terminal domain
PF03764 EFG_IV Elongation factor G, domain IV
PF03876 RNA_pol_Rpb7_N RNA polymerase Rpb7-like, N-terminal domain
PF03947 Ribosomal_L2_C Ribosomal Proteins L2, C-terminal domain
PF03950 tRNA-synt_1c_C tRNA synthetases class I (E and Q), anti-codon
binding domain
PF04068 RLI Possible metal-binding domain in RNase L
inhibitor, RLI
PF04560 RNA_pol_Rpb2_7 RNA polymerase Rpb2, domain 7
PF04561 RNA_pol_Rpb2_2 RNA polymerase Rpb2, domain 2
PF04563 RNA_pol_Rpb2_1 RNA polymerase beta subunit
PF04565 RNA_pol_Rpb2_3 RNA polymerase Rpb2, domain 3
PF04566 RNA_pol_Rpb2_4 RNA polymerase Rpb2, domain 4
PF04567 RNA_pol_Rpb2_5 RNA polymerase Rpb2, domain 5
PF04983 RNA_pol_Rpb1_3 RNA polymerase Rpb1, domain 3
PF04997 RNA_pol_Rpb1_1 RNA polymerase Rpb1, domain 1
PF05000 RNA_pol_Rpb1_4 RNA polymerase Rpb1, domain 4
PF05670 DUF814 Domain of unknown function (DUF814)
PF05746 DALR_1 DALR anticodon binding domain
PF05833 FbpA Fibronectin-binding protein A N-terminus (FbpA)
PF07541 EIF_2_alpha Eukaryotic translation initiation factor 2
alpha subunit
PF08068 DKCLD DKCLD (NUC011) domain
PF08069 Ribosomal_S13_N Ribosomal S13/S15 N-terminal domain
PF09173 eIF2_C Initiation factor eIF2 gamma, C terminal
PF09249 tRNA_NucTransf2 tRNA nucleotidyltransferase, second domain
PF09377 SBDS_C SBDS protein C-terminal domain