Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.genebee.msu.ru/~bennigsen/nhunt_files/ex3/nhunt-3.out Дата изменения: Mon Oct 10 18:48:19 2011 Дата индексирования: Mon Oct 1 19:31:42 2012 Кодировка:

Nhunt 1.5.6.2 [May-16-2011]

Length of query file: 125 bp
Length of database file: 5419036 bp

lambda = 0.204

Number Sequences producing significant alignments: Score E-value
1 CP001176 99.2 0.118707
2 CP001176 98.1 0.148253
3 CP001176 90.4 0.708939



Alignment 1: misc_240777 from 20 to 105, CP001176 from 503063 to 503146
Initial score: 101.6 (33.1 bits), adjusted score: 99.17 (32.4 bits), E-value: 0.118707
Identity = 53/86 (62%)
Strand: Plus/Plus

Compositional adjustment is on.
Enthropy = 0.300059.
Query frequences: A: 0.391697, T: 0.328721, G: 0.139791, C: 0.139791,
Subject frequences: A: 0.335869, T: 0.303668, G: 0.185598, C: 0.174865,
Adjusted substitution matrix (subject letters are in rows, query letters are in columns):
A T G C
A 2.272196 -1.224449 -3.595478 -3.595478
T -1.125599 2.818682 -4.193052 -4.193052
G -2.004893 -2.504008 6.783346 -13.840003
C -2.159346 -2.708820 -31.348001 7.003797

Query: 20 ctaccttcgtttttttgattaagaatgattttattatcgtaagtaaaattacatgaacat 79
|| | |||||| ||| |||||||| | | | | || |||| | || | ||
Sbjct: 503063 cttcaatcgtttgttttgttaagaataaatat-tcttcataagaataagccttttgacgc 503121

Query: 80 ttaaaaaggaaaacgacatgaaacca 105
|||| |||| || | || | |||
Sbjct: 503122 acaaaagggaagacagc-tggatcca 503146


Alignment 2: misc_240777 from 13 to 123, CP001176 from 2718022 to 2717915
Initial score: 108.8 (35.3 bits), adjusted score: 98.08 (32.1 bits), E-value: 0.148253
Identity = 64/111 (58%)
Strand: Plus/Minus

Compositional adjustment is on.
Enthropy = 0.188378.
Query frequences: A: 0.416618, T: 0.301425, G: 0.136864, C: 0.145093,
Subject frequences: A: 0.342911, T: 0.359804, G: 0.165535, C: 0.131749,
Adjusted substitution matrix (subject letters are in rows, query letters are in columns):
A T G C
A 1.653068 -0.939295 -2.375357 -2.205032
T -0.627964 2.079187 -2.233923 -2.076011
G -1.484951 -2.197083 6.181402 -6.804126
C -1.951214 -2.965096 -37.928173 6.792264

Query: 13 aaattgactaccttcgtttttttgattaagaatgattttattatcgtaagtaaaattaca 72
| | | || ||| ||| | || || || | | |||| | ||| |||| | |
Sbjct: 2718022 atagtaacctcctgaatttatatgtatacgattagtagtattcaagaaagggaaataaaa 2717963

Query: 73 tgaacatttaaaaaggaaaacgacatgaaaccaaagcacagaatcaacatt 123
|||||||||||| | |||| | | | | || | || || ||
Sbjct: 2717962 tgaacatttaaattg--aaac-tctttcttcttgtgtactggatttacgtt 2717915


Alignment 3: misc_240777 from 12 to 98, CP001176 from 4716612 to 4716528
Initial score: 94.9 (31.2 bits), adjusted score: 90.41 (29.8 bits), E-value: 0.708939
Identity = 51/87 (59%)
Strand: Plus/Minus

Compositional adjustment is on.
Enthropy = 0.272176.
Query frequences: A: 0.387552, T: 0.346027, G: 0.148783, C: 0.117639,
Subject frequences: A: 0.247347, T: 0.374709, G: 0.194279, C: 0.183666,
Adjusted substitution matrix (subject letters are in rows, query letters are in columns):
A T G C
A 2.763479 -1.521249 -4.749493 -7.529638
T -0.838620 2.179359 -2.583058 -3.577803
G -1.771428 -2.034426 6.156776 -34.545559
C -1.896311 -2.182352 -8.851435 7.217623

Query: 12 gaaattgactaccttcgtttttttgattaagaatgattttattatcgtaagtaaaattac 71
| ||| ||| ||||||||||||||| || | || |||| | ||| || |
Sbjct: 4716612 gtaataaactcccttcgtttttttga-agggagtttttctatttaagcaagcaactctg- 4716555

Query: 72 atgaacatttaaaaaggaaaacgacat 98
||| | ||||| | |||
Sbjct: 4716554 atgcgttatgctgaaggacttcttcat 4716528